Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge

dc.contributor.author Aydin, Zafer
dc.contributor.author Sieberts, Solveig K.
dc.contributor.author Schaff, Jennifer
dc.contributor.author Duda, Marlena
dc.contributor.author Pataki, Balint Armin
dc.contributor.author Sun, Ming
dc.contributor.author Snyder, Phil
dc.contributor.author Daneault, Jean-Francois
dc.contributor.author Parisi, Federico
dc.contributor.author Costante, Gianluca
dc.contributor.author Rubin, Udi
dc.contributor.author Banda, Peter
dc.contributor.author Chae, Yooree
dc.contributor.author Chaibub Neto, Elias
dc.contributor.author Dorsey, E. Ray
dc.contributor.author Chen, Aipeng
dc.contributor.author Elo, Laura L.
dc.contributor.author Espino, Carlos
dc.contributor.author Glaab, Enrico
dc.contributor.author Goan, Ethan
dc.contributor.author Golabchi, Fatemeh Noushin
dc.contributor.author Gormez, Yasin
dc.contributor.author Jaakkola, Maria K.
dc.contributor.author Jonnagaddala, Jitendra
dc.contributor.author Klen, Riku
dc.contributor.author Li, Dongmei
dc.contributor.author McDaniel, Christian
dc.contributor.author Perrin, Dimitri
dc.contributor.author Perumal, Thanneer M.
dc.contributor.author Rad, Nastaran Mohammadian
dc.contributor.author Rainaldi, Erin
dc.contributor.author Sapienza, Stefano
dc.contributor.author Schwab, Patrick
dc.contributor.author Shokhirev, Nikolai
dc.contributor.author Venalainen, Mikko S.
dc.contributor.author Vergara-Diaz, Gloria
dc.contributor.author Zhang, Yuqian
dc.contributor.author Wang, Yuanjia
dc.contributor.author Guan, Yuanfang
dc.contributor.author Brunner, Daniela
dc.contributor.author Bonato, Paolo
dc.contributor.author Mangravite, Lara M.
dc.contributor.author Omberg, Larsson
dc.contributor.department AGÜ, Mühendislik Fakültesi, Elektrik - Elektronik Mühendisliği Bölümü en_US
dc.contributor.institutionauthor Aydin, Zafer
dc.date.accessioned 2022-03-05T10:25:55Z
dc.date.available 2022-03-05T10:25:55Z
dc.date.issued 2021 en_US
dc.description The Parkinson's Disease Digital Biomarker Challenge was funded by the Robert Wood Johnson Foundation and the Michael J. Fox Foundation. Data were contributed by users of the Parkinson mPower mobile application as part of the mPower study developed by Sage Bionetworks and described in Synapse [https://doi.org/10.7303/syn4993293].Resources and support for J.S. were provided by Elder Research, an AI and Data Science consulting agency. M.D. was supported by NIH NIGMS Bioinformatics Training Grant (5T32GM070449-12). J.F.D. was supported by a postdoctoral fellowship from the Canadian Institutes of Health Research. L.L.E. reports grants from the European Research Council ERC (677943), European Union's Horizon 2020 research and innovation programme (675395), Academy of Finland (296801, 304995, 310561 and 314443), and Sigrid Juselius Foundation, during the conduct of the study. EG1 acknowledges the funding support by the Fonds Nationale de la Recherche (FNR) Luxembourg, through the National Centre of Excellence in Research (NCER) on Parkinson's disease (I1R-BIC-PFN-15NCER), and as part of the grant project PD-Strat (INTER/11651464). M.K.J. was supported by Alfred Kordelin Foundation. J.J. is supported by UNSW Sydney Electronic Practice Based Research Network (ePBRN) and Translational Cancer Research Network (TCRN) programs. D.L. is supported in part by the University of Rochester CTSA award number UL1 TR002001 from the National Center for Advancing Translational Sciences of the National Institutes of Health. PS2 is supported by the Swiss National Science Foundation (SNSF) project No. 167302 within the National Research Program (NRP) 75 "Big Data". P.S. is an affiliated PhD fellow at the Max Planck ETH Center for Learning Systems. Y.G. is supported by NIH R35GM133346, NSF#1452656, Michael J. Fox Foundation #17373, American Parkinson Disease Association AWD007950. Cohen Veterans Bioscience contributed financial support to Early Signal Foundation's costs (U.R., C.E., and D.B.). en_US
dc.description.abstract Consumer wearables and sensors are a rich source of data about patients' daily disease and symptom burden, particularly in the case of movement disorders like Parkinson's disease (PD). However, interpreting these complex data into so-called digital biomarkers requires complicated analytical approaches, and validating these biomarkers requires sufficient data and unbiased evaluation methods. Here we describe the use of crowdsourcing to specifically evaluate and benchmark features derived from accelerometer and gyroscope data in two different datasets to predict the presence of PD and severity of three PD symptoms: tremor, dyskinesia, and bradykinesia. Forty teams from around the world submitted features, and achieved drastically improved predictive performance for PD status (best AUROC = 0.87), as well as tremor- (best AUPR = 0.75), dyskinesia- (best AUPR = 0.48) and bradykinesia-severity (best AUPR = 0.95). en_US
dc.description.sponsorship Robert Wood Johnson Foundation (RWJF) Michael J. Fox Foundation NIH NIGMS Bioinformatics Training Grant 5T32GM070449-12 Canadian Institutes of Health Research (CIHR) European Research Council (ERC) European Commission 677943 European Union's Horizon 2020 research and innovation programme 675395 Academy of Finland 296801 304995 310561 314443 Sigrid Juselius Foundation Fonds Nationale de la Recherche (FNR) Luxembourg, through the National Centre of Excellence in Research (NCER) on Parkinson's disease I1R-BIC-PFN-15NCER project PD-Strat INTER/11651464 Alfred Kordelin Foundation UNSW Sydney Electronic Practice Based Research Network (ePBRN) program UNSW Translational Cancer Research Network (TCRN) program United States Department of Health & Human Services National Institutes of Health (NIH) - USA NIH National Center for Advancing Translational Sciences (NCATS) UL1 TR002001 Swiss National Science Foundation (SNSF) 167302 United States Department of Health & Human Services National Institutes of Health (NIH) - USA R35GM133346 National Science Foundation (NSF) 1452656 Michael J. Fox Foundation 17373 American Parkinson Disease Association AWD007950 Cohen Veterans Bioscience en_US
dc.identifier.issn 2398-6352
dc.identifier.other PubMed ID33742069
dc.identifier.uri https //doi.org/10.1038/s41746-021-00414-7
dc.identifier.uri https://hdl.handle.net/20.500.12573/1245
dc.identifier.volume Volume 4 Issue 1 en_US
dc.language.iso eng en_US
dc.publisher NATURE RESEARCHHEIDELBERGER PLATZ 3, BERLIN 14197, GERMANY en_US
dc.relation.isversionof 10.1038/s41746-021-00414-7 en_US
dc.relation.journal NPJ DIGITAL MEDICINE en_US
dc.relation.publicationcategory Makale - Uluslararası - Editör Denetimli Dergi en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject GENDER-DIFFERENCES en_US
dc.subject HYPOTHESIS TESTS en_US
dc.subject VALIDATION en_US
dc.title Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge en_US
dc.type article en_US

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