Automated quantification of immunomagnetic beads and leukemia cells from optical microscope images

dc.contributor.author Uslu, Fatma
dc.contributor.author Icoz, Kutay)
dc.contributor.author Tasdemir, Kasim
dc.contributor.author Yilmaz, Bulent
dc.contributor.authorID 0000-0003-4542-2728 en_US
dc.contributor.authorID 0000-0002-0947-6166 en_US
dc.contributor.department AGÜ, Mühendislik Fakültesi, Elektrik - Elektronik Mühendisliği Bölümü en_US
dc.date.accessioned 2021-03-25T11:26:18Z
dc.date.available 2021-03-25T11:26:18Z
dc.date.issued 2019 en_US
dc.description Authors acknowledge The Scientific and Technological Research Council of Turkey (TUBITAK) (Project No: 115E020) for financial support. en_US
dc.description.abstract Quantification of tumor cells is crucial for early detection and monitoring the progress of cancer. Several methods have been developed for detecting tumor cells. However, automated quantification of cells in the presence of immunomagnetic beads has not been studied. In this study, we developed computer vision based algorithms to quantify the leukemia cells captured and separated by micron size immunomagnetic beads. Color, size based object identification and machine learning based methods were implemented to quantify targets in the images recorded by a bright field microscope. Images acquired by a 40x or a 20x objective were analyzed, the immunomagnetic beads were detected with an error rate of 0.0171 and 0.0384 respectively. Our results reveal that the proposed method attains 91.6% precision for the 40x objective and 79.7% for the 20x objective. This algorithm has the potential to be the signal readout mechanism of a biochip for cell detection. (C) 2019 Elsevier Ltd. All rights reserved. en_US
dc.description.sponsorship Turkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) 115E020 en_US
dc.identifier.endpage 482 en_US
dc.identifier.issn 1746-8094
dc.identifier.issn 1746-8108
dc.identifier.startpage 473 en_US
dc.identifier.uri https://doi.org/10.1016/j.bspc.2019.01.002
dc.identifier.uri https://hdl.handle.net/20.500.12573/631
dc.identifier.volume Volume: 49 en_US
dc.language.iso eng en_US
dc.publisher ELSEVIER SCI LTD, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND en_US
dc.relation.isversionof 10.1016/j.bspc.2019.01.002 en_US
dc.relation.journal BIOMEDICAL SIGNAL PROCESSING AND CONTROL en_US
dc.relation.publicationcategory Makale - Uluslararası - Editör Denetimli Dergi en_US
dc.relation.tubitak 115E020
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Support vector machines en_US
dc.subject Immunomagnetic beads en_US
dc.subject Machine learning en_US
dc.subject Bright-field optical microscopy en_US
dc.subject Image-processing en_US
dc.subject Leukemia cells en_US
dc.title Automated quantification of immunomagnetic beads and leukemia cells from optical microscope images en_US
dc.type article en_US

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