Improved classification of colorectal polyps on histopathological images with ensemble learning and stain normalization

dc.contributor.author Yengec-Tasdemir, Sena Busra
dc.contributor.author Aydin, Zafer
dc.contributor.author Akay, Ebru
dc.contributor.author Dogan, Serkan
dc.contributor.author Yilmaz, Bulent
dc.contributor.authorID 0000-0001-8322-4832 en_US
dc.contributor.authorID 0000-0001-7686-6298 en_US
dc.contributor.authorID 0000-0003-2954-1217 en_US
dc.contributor.department AGÜ, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü en_US
dc.contributor.institutionauthor Yengec-Tasdemir, Sena Busra
dc.contributor.institutionauthor Aydin, Zafer
dc.contributor.institutionauthor Yilmaz, Bulent
dc.date.accessioned 2023-07-14T06:46:13Z
dc.date.available 2023-07-14T06:46:13Z
dc.date.issued 2023 en_US
dc.description.abstract Background and Objective: Early detection of colon adenomatous polyps is critically important because correct detection of it significantly reduces the potential of developing colon cancers in the future. The key challenge in the detection of adenomatous polyps is differentiating it from its visually similar counterpart, non-adenomatous tissues. Currently, it solely depends on the experience of the pathologist. To assist the pathologists, the objective of this work is to provide a novel non-knowledge-based Clinical Decision Support System (CDSS) for improved detection of adenomatous polyps on colon histopathology images. Methods: The domain shift problem arises when the train and test data are coming from different distributions of diverse settings and unequal color levels. This problem, which can be tackled by stain normalization techniques, restricts the machine learning models to attain higher classification accuracies. In this work, the proposed method integrates stain normalization techniques with ensemble of competitively accurate, scalable and robust variants of CNNs, ConvNexts. The improvement is empirically analyzed for five widely employed stain normalization techniques. The classification performance of the proposed method is evaluated on three datasets comprising more than 10k colon histopathology images. Results: The comprehensive experiments demonstrate that the proposed method outperforms the stateof-the-art deep convolutional neural network based models by attaining 95% classification accuracy on the curated dataset, and 91.1% and 90% on EBHI and UniToPatho public datasets, respectively. Conclusions: These results show that the proposed method can accurately classify colon adenomatous polyps on histopathology images. It retains remarkable performance scores even for different datasets coming from different distributions. This indicates that the model has a notable generalization ability. (c) 2023 Elsevier B.V. All rights reserved. en_US
dc.identifier.endpage 17 en_US
dc.identifier.issn 0169-2607
dc.identifier.issn 1872-7565
dc.identifier.other WOS:000955039400001
dc.identifier.startpage 1 en_US
dc.identifier.uri https://doi.org/10.1016/j.cmpb.2023.107441
dc.identifier.uri https://hdl.handle.net/20.500.12573/1621
dc.identifier.volume 232 en_US
dc.language.iso eng en_US
dc.publisher ELSEVIER IRELAND en_US
dc.relation.isversionof 10.1016/j.cmpb.2023.107441 en_US
dc.relation.journal COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.relation.tubitak 120E204
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject 41A05 en_US
dc.subject 41A10 en_US
dc.subject 65D05 en_US
dc.subject 65D17 en_US
dc.subject Colorectal Polyps en_US
dc.subject Colonic Polyp Classification en_US
dc.subject Histopathology Image Classification en_US
dc.subject Computer-aided Diagnosis en_US
dc.subject Clinical Decision Support System en_US
dc.subject Ensemble of Deep Convolutional Neural Networks en_US
dc.subject ConvNeXt en_US
dc.subject Transfer Learning en_US
dc.title Improved classification of colorectal polyps on histopathological images with ensemble learning and stain normalization en_US
dc.type article en_US

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