A Novel Germline Pregnane X Receptor (PXR) Variant Predisposing to Hodgkin Lymphoma in Two Siblings

dc.contributor.author Khodzhaev, Khusan
dc.contributor.author Sudutan, Tugce
dc.contributor.author Erbilgin, Yucel
dc.contributor.author Saritas, Merve
dc.contributor.author Yegen, Gulcin
dc.contributor.author Bozkurt, Ceyhun
dc.contributor.author Kebudi, Rejin
dc.date.accessioned 2025-09-25T10:39:18Z
dc.date.available 2025-09-25T10:39:18Z
dc.date.issued 2024
dc.description.abstract Hodgkin's lymphoma (HL) is the most common cancer in adolescents and young adults. A family history of HL increases the risk of developing HL in other family members. Identification of genetic predisposition variants in HL is important for understanding disease aetiology, prognosis, and response to treatment. Aberrant activation of the NF-kappa B pathway is a hallmark feature of HL, contributing to the survival and proliferation of the malignant cells' characteristic of HL. The family with multiple consanguineous marriages with siblings of diagnosed HL was examined by whole-exome sequencing. We found a germline homozygous variation in the PXR ligand binding domain (NM_003889.3:c.811G>A, p.(Asp271Asn)), which was classified as pathogenic by prediction tools and segregated in HL cases. Increased PXR expression was found in homozygous variant carriers compared to heterozygous carriers by quantitative real time PCR (qRT-PCR) and immunofluorescence staining of patients' formalin-fixed paraffin-embedded tissues showed upregulation of PXR, particularly in Hodgkin Reed/Sternberg (HRS) cells. Patients with homozygous PXR variant showed significantly high expression compared to PXR wild-type HL, heterozygous and controls (p = 0.0001, p = 0.0004 and p = 0.0001, respectively). PXR homozygous HRS cells had significantly higher PXR expression compared to PXR wild-type HRS cells (p < 0.0001, 3.27-fold change). Albeit PXR's prominent expression in cytoplasm of HRS cells, homozygous PXR HRS cells showed increased PXR expression in nucleus (p < 0.001). PXR is a member of the nuclear receptor superfamily and previous studies have demonstrated a pleiotropic effect of PXR on malignant transformation. Expression analysis showed that cell proliferation, apoptosis and inflammation related genes were deregulated, in homozygous PXR HL cases. This study provided clinical evidence to previously reported Sxr(-/-) mice model that develop multifocal lymphomas, had an aberrantly increased NF-kappa B expression and consistent inflammation. Further functional studies are needed to elucidate the exact mechanisms of action of PXR in HL pathogenesis. en_US
dc.description.sponsorship Scientific Research Projects Coordination Unit of Istanbul University [TDK-2022-38816, TDK-2020-37127, TSA-2023-39470]; General Directorate of Development Agencies, Istanbul Development Agency [TR10/22/TNH/0001] en_US
dc.description.sponsorship This study was funded by Scientific Research Projects Coordination Unit of Istanbul University, Project number: TDK-2022-38816, TDK-2020-37127, TSA-2023-39470 and General Directorate of Development Agencies, Istanbul Development Agency Project number: TR10/22/TNH/0001. en_US
dc.identifier.doi 10.1016/j.ejmg.2024.104975
dc.identifier.issn 1769-7212
dc.identifier.issn 1878-0849
dc.identifier.scopus 2-s2.0-85205002220
dc.identifier.uri https://doi.org/10.1016/j.ejmg.2024.104975
dc.identifier.uri https://hdl.handle.net/20.500.12573/3122
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.relation.ispartof European Journal of Medical Genetics en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject Lymphoma en_US
dc.subject Pxr en_US
dc.subject Germline Predisposition en_US
dc.subject Hrs Cell en_US
dc.subject Nf-Kappa B en_US
dc.title A Novel Germline Pregnane X Receptor (PXR) Variant Predisposing to Hodgkin Lymphoma in Two Siblings en_US
dc.type Article en_US
dspace.entity.type Publication
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gdc.author.scopusid 17136134200
gdc.author.wosid Erbilgin, Yucel/Aac-4769-2020
gdc.author.wosid Saritas, Merve/Kod-8079-2024
gdc.author.wosid Sayitoglu, Muge/B-6578-2015
gdc.author.wosid Kebudi, Rejin/Aad-8047-2020
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gdc.description.department Abdullah Gül University en_US
gdc.description.departmenttemp [Khodzhaev, Khusan; Sudutan, Tugce; Erbilgin, Yucel; Saritas, Merve; Sayitogl, Muge] Istanbul Univ, Aziz Sancar Inst Expt Med, Genet Dept, Istanbul, Turkiye; [Khodzhaev, Khusan; Sudutan, Tugce] Istanbul Univ, Inst Hlth Sci, Istanbul, Turkiye; [Saritas, Merve] Abdullah Gul Univ, Fac Life & Nat Sci, Mol Biol & Genet Dept, Kayseri, Turkiye; [Yegen, Gulcin] Istanbul Univ, Istanbul Med Fac, Dept Pathol, Istanbul, Turkiye; [Bozkurt, Ceyhun] Istinye Univ, Sch Med, Dept Pediat Hematol & Oncol, Istanbul, Turkiye; [Kebudi, Rejin] Istanbul Univ, Oncol Inst, Div Pediat Hematol Oncol, Istanbul, Turkiye; [Kebudi, Rejin] Istanbul Univ, Oncol Inst, Turgut Ozal Millet St 118, TR-34093 Istanbul, Turkiye; [Sayitogl, Muge] Istanbul Univ, Aziz Sancar Inst Expt Med, Gureba Hastanesi St 69, TR-34093 Istanbul, Turkiye en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q3
gdc.description.startpage 104975
gdc.description.volume 72 en_US
gdc.description.woscitationindex Science Citation Index Expanded
gdc.description.wosquality Q3
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gdc.identifier.pmid 39322061
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gdc.oaire.keywords Male
gdc.oaire.keywords Adult
gdc.oaire.keywords Lymphoma
gdc.oaire.keywords Adolescent
gdc.oaire.keywords Germline predisposition
gdc.oaire.keywords PXR
gdc.oaire.keywords Siblings
gdc.oaire.keywords Homozygote
gdc.oaire.keywords Pregnane X Receptor
gdc.oaire.keywords HRS Cell
gdc.oaire.keywords Hodgkin Disease
gdc.oaire.keywords NF-κB
gdc.oaire.keywords Pedigree
gdc.oaire.keywords Humans
gdc.oaire.keywords Female
gdc.oaire.keywords Genetic Predisposition to Disease
gdc.oaire.keywords HRS cell
gdc.oaire.keywords Germ-Line Mutation
gdc.oaire.keywords Germline Predisposition
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gdc.virtual.author Sarıtaş, Merve
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