Vim-Polyp: Multimodal Colon Polyp Dataset with Video, Histopathology, and Protein Expression
| dc.contributor.author | Dogan, Refika Sultan | |
| dc.contributor.author | Akay, Ebru | |
| dc.contributor.author | Dogan, Serkan | |
| dc.contributor.author | Yilmaz, Bulent | |
| dc.date.accessioned | 2025-12-21T21:33:44Z | |
| dc.date.available | 2025-12-21T21:33:44Z | |
| dc.date.issued | 2025 | |
| dc.description.abstract | The dataset in this study includes 202 videos with a total of 422 minutes, reaching Kayseri City Hospital's gastroenterology department as colonoscopy videos and 1903 microscopy images between 2019 and 2021. It includes 399 colonoscopy, microscopy images, and pathological diagnoses of polyps, as well as immunohistochemical staining results for proteins that play an important role in the assessment of cancerous cells, such as staining results for p53 (clone: bp53-11), Ki-67 (clone: 30-9), CD34 (clone: QBend/10), PD-L1 (clone: SP142), BRAF (clone: V600E) and VEGF (clone: SP125). By sharing the data openly, we aim to facilitate benchmarking, exploratory analysis and transfer-learning studies on colorectal polyps and cancer. In combination with external datasets or pretrained models, the resource can help advance data-driven detection and characterisation work. The diverse range of polyps assigned to cancer stages from 201 patients makes this tool valuable for researchers and clinicians in furthering diagnosis and treatment. | en_US |
| dc.description.sponsorship | Trkiye Bilimsel ve Teknolojik Arastirma Kurumu (Scientific and Technological Research Council of Turkey) [120E204] | en_US |
| dc.description.sponsorship | This work was supported by the Scientific and Technological Research Council of Turkey (TUBITAK 1001), Turkiye, under Grant 120E204. This work was derived from the corresponding author Refika Sultan Do & gbreve;an Ph.D. thesis' Artificial Intelligence Assisted Prognostic Marker Determination from Colonoscopy and Histopathology Images for Colon Polyps, 2023'51. Additionally, the valuable contributions of the Kayseri City Hospital Gastroenterology and Pathology Departments to this study are sincerely appreciated. The authors are grateful to Gulf University for Science and Technology (GUST), Kuwait, for covering the APC for this paper, enabling its publication. | en_US |
| dc.identifier.doi | 10.1038/s41597-025-06168-1 | |
| dc.identifier.issn | 2052-4463 | |
| dc.identifier.scopus | 2-s2.0-105023790490 | |
| dc.identifier.uri | https://doi.org/10.1038/s41597-025-06168-1 | |
| dc.identifier.uri | https://hdl.handle.net/20.500.12573/5716 | |
| dc.language.iso | en | en_US |
| dc.publisher | Nature Portfolio | en_US |
| dc.relation.ispartof | Scientific Data | en_US |
| dc.rights | info:eu-repo/semantics/openAccess | en_US |
| dc.title | Vim-Polyp: Multimodal Colon Polyp Dataset with Video, Histopathology, and Protein Expression | |
| dc.type | Article | en_US |
| dspace.entity.type | Publication | |
| gdc.author.scopusid | 57206480069 | |
| gdc.author.scopusid | 36993713400 | |
| gdc.author.scopusid | 7102693092 | |
| gdc.author.scopusid | 57189925966 | |
| gdc.coar.access | open access | |
| gdc.coar.type | text::journal::journal article | |
| gdc.description.department | Abdullah Gül Üniversitesi | en_US |
| gdc.description.departmenttemp | [Dogan, Refika Sultan] Abdullah Gul Univ, Fac Life & Nat Sci, Dept Bioengn, TR-38080 Kayseri, Turkiye; [Dogan, Refika Sultan; Yilmaz, Bulent] Abdullah Gul Univ, Biomed Instrumentat & Signal Anal Lab, TR-38080 Kayseri, Turkiye; [Akay, Ebru] Kayseri City Hosp, Pathol Clin, TR-38080 Kayseri, Turkiye; [Dogan, Serkan] Kayseri City Hosp, Gastroenterol Clin, TR-38080 Kayseri, Turkiye; [Yilmaz, Bulent] Gulf Univ Sci & Technol GUST, GUST Engn & Appl Innovat Res Ctr GEAR, Elect & Comp Engn Dept, Hawally 32093, Kuwait | en_US |
| gdc.description.issue | 1 | en_US |
| gdc.description.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | en_US |
| gdc.description.scopusquality | Q1 | |
| gdc.description.volume | 12 | en_US |
| gdc.description.woscitationindex | Science Citation Index Expanded | |
| gdc.description.wosquality | Q1 | |
| gdc.identifier.openalex | W4416947323 | |
| gdc.identifier.pmid | 41339361 | |
| gdc.identifier.wos | WOS:001631045200001 | |
| gdc.openalex.collaboration | International | |
| gdc.opencitations.count | 0 | |
| gdc.plumx.newscount | 1 | |
| gdc.plumx.scopuscites | 0 | |
| gdc.scopus.citedcount | 0 | |
| gdc.virtual.author | Doğan, Refika Sultan | |
| gdc.wos.citedcount | 0 | |
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