Scopus İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395
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Article Dissecting the Strain and Sex Specific Connectome Signatures of Unanesthetized C57BL/6J and DBA/2J Mice Using Magnetic Resonance Imaging(Wiley, 2026) Neuberger, Thomas; Kamens, Helen M.; Zhang, Nanyin; Ünsal, Hayreddin Said; Arefin, Tanzil M.Mouse models are an essential tool for understanding behavior and disease states in neuroscience research. While genetic and sex-specific effects have been reported in many neurodegenerative and psychiatric illnesses, these factors may also alter baseline neuroanatomical features of mice. This raises the question of whether the observed changes are related to the disease being studied (i.e., pathological differences) or if there are baseline strain or sex differences that may predispose animals to different responses. Over the past decade, tremendous effort has been made to map neural architecture at various scales; however, the complex relationships, including identifying genetic and sex-specific differences in brain structure and function, remain understudied. To bridge this gap, we used C57BL/6J and DBA/2J mice, two of the most widely used inbred mouse strains in neuroscience research, to investigate strain and sex-specific features of the brain connectome in awake animals using magnetic resonance imaging (MRI). By combining resting-state functional MRI and diffusion MRI, we found that the motor, sensory, limbic, and salience networks exhibit significant differences in both functional and structural domains between C57BL/6J and DBA/2J mice. Further, functional and structural properties of the brain were significantly correlated in both strains. Our results underscore the importance of considering these baseline differences when interpreting brain-behavior interactions in mouse models of human disorders.Article Comparison of Rapamycin and 3-Methyladenine in Cisplatin-Induced Experimental Cardiotoxicity(Wiley, 2026) Kaymak, Emin; Karabulut, Derya; Yalcin, Betul; Guner, Serife Ayaz; Ozturk, Emel; Findik, Fatma; Boyvat, DuduIn this study, we evaluated how cisplatin cardiotoxicity affects the histological and endocrine functions of the heart and autophagy while using Rapamycin(Rapa) and 3-methyladenine(3-MA) as autophagy activators and inhibitors. Control, Cisplatin (Cis), 3-methyladenine + Cisplatin (3-MA + Cis) and Rapamycin + Cisplatin (Rapa + Cis). Rapa and 3-MA were administered for 15 days, while a single dose of cisplatin was administered on the 7th day. Natriuretic peptide receptor-A(NPR-A), receptor-B(NPR-B) and biochemically atrial natriuretic peptide(ANP) and brain natriuretic peptide(BNP) levels were evaluated in heart tissue. Cis caused a statistically significant increase in NPR-A and NPR-B expression, as well as ANP and BNP levels. However, the levels of Beclin-1 and LC3B were not statistically significant. Rapa was more effective than 3-MA + Cis on NPR-A and NPR-B expressions, but did not show the same effect on ANP and NT-proBNP levels. Cis caused an increase in Beclin-1 and LC3B levels, while a decrease was observed in both 3-MA + Cis and Rapa + Cis groups. Our results revealed that Cis cardiotoxicity disrupts autophagy and endocrine function of the heart. It was concluded that by continuing the activator and inhibitor substances after Cis application, more effective results can be obtained in Beclin-1 expression than LC3B expression and that they can be effective in eliminating the toxicity of Cis.Article An Adaptation Mechanism of Model Reference Adaptive System Based on Variable Structure Control for Online Parameter Estimation of IPMSM(Wiley, 2026-01) Tekgun, Burak; Barut, Murat; Ates, ErtugrulThis study introduces stator currents-based model reference adaptive system (MRAS) estimators that employ variable structured control (VSC) in the adaptation mechanism to enable the online estimation of stator resistance and permanent magnet (PM) flux in interior permanent magnet synchronous motors (IPMSMs). These MRAS estimators estimate stator resistance and PM flux by analysing the error between the stator currents measured as the reference model and the stator currents generated by the adaptive model. The performance of the proposed estimators is assessed through simulation studies. Furthermore, the proposed approach is compared to a conventional MRAS employing a fixed-gain proportional-integral (PI) controller. Simulation results and error analyses indicate that the VSC-based MRAS algorithms outperform traditional PI-based MRAS in terms of accuracy and reliability. Additionally, the proposed method eliminates the reliance on a fixed-gain PI controller, a common component in conventional MRAS systems.Article Citation - WoS: 1Citation - Scopus: 1A Small Indole Derivative Isolated From Caper (Capparis Ovata) as an Inducer of P53-Mediated Apoptosis in Prostate Cancer: Comprehensive In Vitro and In Silico Studies(Wiley, 2025-12-31) Acar, Ozden Ozgun; Gazioglu, Isil; Oruc, Hatice; Kale, Elif; Senol, Halil; Topcu, Gulacti; Sen, AlaattinNatural products with stunning chemical diversity have been extensively researched for their anticancer potential for more than fifty years. This study aimed to determine the effect of indole derivative 1H-indole-2-hydroxy-3-carboxylic acid (IHCA), isolated as a novel alkaloid from Capparis ovata, on selected tumor suppressor, apoptotic, and cell cycle regulatory genes, which are known to be important in cancer pathophysiology, on Caco-2 and LNCaP cells in comparison with Taxol. The molecular mechanism of IHCA's anticancer activity is essentially undefined. Different concentrations of IHCA increased the expression levels of apoptosis-related genes, including BCL-2 and TNF-alpha. In addition, the tumor suppressor genes PTEN, P53, and RB were increased in LNCaP and Caco-2 cells. KRAS, an oncogenic gene, was significantly downregulated by IHCA in LNCaP cells. Western blot results showed that the protein expression levels of P53 and PTEN in LNCaP cells were increased when treated with IHCA, whereas CDK4 and TNF-alpha were decreased. Finally, IHCA and doxorubicin significantly increased P53-driven luciferase activity compared to the control. The results strongly suggest that the novel natural compound IHCA has an anticancer effect involving the regulation of the P53 gene and its networks in vitro. The molecular docking and MD simulation analyses reveal that IHCA exhibits superior binding potential to the MDM2 protein compared to Nutlin-3a. MD simulations further confirm that IHCA maintains a more stable and consistent interaction with MDM2, as indicated by lower RMSD values and reduced ligand fluctuation. These results highlight IHCA's potential as a more effective MDM2 inhibitor, suggesting its promise as a lead compound for anticancer drug development.Clinical Trial Registration: Not applicable.Article Citation - WoS: 2Citation - Scopus: 1A Comprehensive Analysis of Acoustic Emission Signals To Distinguish the Different Damage Types for Fiber-Reinforced Polymers: A Review(Wiley, 2025-12-03) Yilmaz, CagatayFiber-reinforced polymers (FRP) attract the attention of key industries, such as aerospace, wind energy, and automotive, as they can reduce the weight of structural components without compromising their mechanical properties. Due to FRP's anisotropic and non-homogeneous structure, their failure under different loading conditions and the corresponding failure mechanisms must be investigated. One method that progressively monitors the failure of FRP underload is Acoustic Emission (AE). AE can register the elastic stress waves in the form of digitized waveforms, released by the discontinuous events that occur in the FRP under load. These discontinuities can be clustered and identified as transverse cracking, fiber/matrix interface debonding, delamination, and fiber failure by analyzing the AE waveforms. Recently, numerous clustering approaches using machine learning algorithms, along with the varying features of AE waveforms, have been developed and are being used. These algorithms include supervised and unsupervised clustering, deep learning algorithms, and neural network methods, among others. While supervised algorithms require a training dataset to classify AE signals, unsupervised algorithms can perform clustering without training datasets. Deep learning and neural network algorithms can train themselves to cluster data, but they may require a significant amount of computer power when the dataset is large. This review paper provides comprehensive information on the clustering algorithm, along with the AE wave features, the range of features for different damage types, and the type of reinforcer.Article Citation - WoS: 1Citation - Scopus: 1Zinc Chalcogenide Based Shell Layers for Colloidal Quantum Wells(Wiley, 2025-04-27) Aldemir, Cagatay Han; Yazici, Ahmet Faruk; Ergezer, Nehir; Korkmaz, Taha Can; Mutlugun, Evren; Kelestemur, YusufColloidal quantum wells, also known as colloidal nanoplatelets (NPLs), have emerged as a promising class of materials for light-emitting devices (LEDs). However, the most widely studied core/shell NPLs, which rely on cadmium-based shell layers, face challenges due to toxicity concerns and improper charge confinement. To address these limitations, a new synthetic approach is presented that enables the controlled growth of zinc chalcogenide-based shell layers on NPLs. The synthesized CdSe/ZnSe core/shell NPLs exhibit emission between 615 and 630 nm, with a moderate photoluminescence quantum yield (PL-QY) of 40-50%. It is also demonstrated that the lateral dimensions of the CdSe core NPLs significantly affect the optical properties of the core/shell heterostructures, with smaller lateral dimensions resulting in narrower emission linewidths as low as 20 nm. Further passivation of these core/shell NPLs with an additional ZnS shell layer significantly increases the PL-QY up to 80-90%. Finally, the device performance of these two core/shell NPLs is investigated by fabricating solution-processed LEDs. With LEDs incorporating CdSe/ZnSe/ZnS core/multi-shell NPLs as the active light-emitting layer, an external quantum efficiency (EQE) of 3.82% and a maximum brightness of 6477 cd m-2 is obtained. These findings underscore the significant potential of zinc chalcogenide-based shell layers in advancing colloidal NPLs toward high-performance light-emitting devices.Article Citation - WoS: 7Citation - Scopus: 7Villages in the City - Urban Planning for Neighbourhood Love(Wiley, 2024-03-17) Kourtit, Karima; Nijkamp, Peter; Turk, Umut; Wahlstrom, MiaThe city comprises of a wide variety of heterogeneous territorial units (e.g. districts or neighbourhoods). In many - especially larger - cities, social capital assets (like community bonds) are mirrored at the level of neighbourhoods which form the home for many sociocultural communities or distinct socio-economic classes. We postulate in this study that the big city is essentially an 'archipelago' made up of 'urban villages'. We analyse the residents' perceived attractiveness regarding their daily local neighbourhood by introducing the concept of 'village love' (or 'neighbourhood love'), inspired by the recent literature on 'city love' (comprising 'body', 'soul' and 'community' constituents of urban life). Based on an extensive and detailed multi-annual database for all neighbourhoods in Rotterdam, the present paper seeks to identify the background factors shaping 'village love' in the city, with particular attention to the citizens' subjective appreciation for and access to a great variety of (physical and immaterial) urban amenities shaping the place-based satisfaction of residents. The theoretical framing of our research resembles the basics of traditional central place theory here transmitted to the urban space in which local proximity to amenities plays a key role. A wide array of relevant amenities impacting on the place-specific well-being feelings ('village love') of residents in various neighbourhoods in the city of Rotterdam is distinguished using inter alia-rich multi-annual survey data. This approach is empirically tested and verified by means of LISA statistics and advanced spatial econometric dependence models ('urbanometrics'). The findings confirm the usefulness of a central place interpretation of 'urban village love' in the city. 'Villages in the City - Urban Planning for Neighbourhood Love': This study advocates that cities are composed of interconnected 'urban villages', each with its own social capital and community bonds. Using extensive data from Rotterdam, we investigate the factors influencing residents' perceived attractiveness and satisfaction with their local neighbourhoods. Our analysis highlights the importance of access to diverse amenities in shaping residents' sense of 'village love'. Through spatial econometric models, the study confirms the central place interpretation of 'urban village love' in the city, shaping future urban planning strategies for fostering vibrant and cohesive communities.imageArticle Citation - WoS: 4Citation - Scopus: 6Traffic Aware Cyclic Sleep-Based Power Consumption Model for a Passive Optical Network(Wiley, 2022-02-28) Butt, Rizwan Aslam; Faheem, Muhammad; Anwar, Muhammad; Mohammadani, Khalid H.; Idrus, Sevia M.For a network, a power consumption model is an important tool to test the performance of a network process for different traffic loads. In a Passive optical network (PON), the optical network unit (ONU) is responsible for the major power consumption of PON. Both IEEE and ITU have standardized a cyclic sleep process (CSP) for ONU energy conservation. In next-generation PON; TWDM and XGS PON, the ONU power contribution has increased further due to higher number of ONUs and ONU being tunable. Therefore, an accurate power consumption model of the CSP process for energy efficiency studies under different traffic conditions is of prime importance. The existing CSP power consumption models do not depict the CSP process accurately especially the inactivity of the ONU in the asleep and sleep aware states are not taken into account which reduce the accuracy of the model. The proposed inactivity aware model (IAM) overcomes these gaps and very accurately models the CSP process, as evident from the results, which are better than earlier model results and quite close to earlier published simulation results. The model is also validated through a simulation-based study and the simulation results are observed to be very close to the model results with only a 5% deviation.Article Citation - WoS: 1Citation - Scopus: 1The Rise of Digital Responsibility: Insights From Türkiye's Banking and E-Commerce Sectors(Wiley, 2025-07-28) Aydogdu, Ceyda Cihan; Karsak, Banu Mujde Baskan; Baskan Karsak, Banu Mujde; Cihan Aydogdu, CeydaThis study examines how the concept of corporate digital responsibility (CDR) principles, such as data security, transparency, and digital inclusivity, is integrated into the corporate structures of the banking and e-commerce sectors in T & uuml;rkiye. The objective is to identify sector-specific key trends, challenges, and strategic approaches related to the adoption of CDR in corporate frameworks. By presenting a comparative analysis of two critical sectors, this research highlights the sectoral differences in understanding and implementing CDR. Employing a qualitative methodology, the research utilizes semi-structured interviews with senior executives, corporate communication directors, IT professionals, and legal experts. The interviews were thematically analyzed and digitized using Python-based coding tools to enhance analytical consistency and depth. The findings indicate that the banking sector demonstrates greater maturity in CDR awareness and an institutionalized approach to CDR, particularly in areas related to data security and regulatory compliance. Conversely, the e-commerce sector shows slower and more fragmented progress, lagging in the adoption and implementation of CDR principles. Both sectors require significant improvements to align with global CDR standards. The study also underlines the importance of cross-sector collaboration, government enforcement mechanisms, and user-driven demands in fostering responsible digital ecosystems. Future studies should employ quantitative methods to evaluate the regulatory and cultural influences on digital responsibility. Furthermore, research that focuses on consumer perspectives, the long-term development of regulatory compliance, and compares different emerging economies will help broaden the current literature on CDR.Article Citation - WoS: 6Citation - Scopus: 6Surface Coating of Polyamide Reverse Osmosis Membranes With Zwitterionic 3-(3,4 (l-DOPA) for Forward Osmosis(Wiley, 2019-03-27) Saki, Seda; Uzal, NigmetTo overcome low permeability and fouling problems of membranes used in FO processes, modification is needed to improve the hydrophilicity, permeability and selectivity of membranes. In this work, thin film composite (TFC) commercial polyamide RO membranes (BW30-LE, SW30-HR, AG and AC) were functionalized with zwitterionicl-DOPA. The effect ofl-DOPA on the morphology of membranes was determined via SEM, FT-IR, AFM and contact angle analysis. Thel-DOPA modified BW30-LE membrane showed excellent properties with 46 degrees contact angle and 3.8 L/m(2)hbar water permeability and 0.83 L/m(2)h salt permeability. Although,l-DOPA modified BW30-LE membrane had the highest water flux and hydrophilicity,l-DOPA modified SW30-HR membrane showed higher FO flux with 9.38 L/m(2)h than BW 30 membrane with 3.5 L/m(2)h at 50 g/L NaCl draw solution. Introducing hydroxyl and carboxyl ionic groups on the membrane surface withl-DOPA coating enhanced the FO performance and water permeability which provide a new insight in FO applications.