Scopus İndeksli Yayınlar Koleksiyonu

Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395

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  • Conference Object
    The Effect of Different Classifiers on Recursive Cluster Elimination in the Analysis of Transcriptomic Data
    (Institute of Electrical and Electronics Engineers Inc., 2023-10-11) Bulut, Nurten; Bakir-Güngör, Burcu; Qaqish, Bahjat F.; Yousef, Malik
    Gene expression data with limited sample size and a large number of genes are frequently encountered in genetic studies. In such high-dimensional data, identification of genes that distinguish between disease states is a challenging task. Feature selection (FS) is a useful approach in dealing with high dimensionality. Support Vector Machines Recursive Cluster Elimination (SVM-RCE) is a technique for FS in high-dimensional data. The SVM-RCE approach has been utilized for identification of clusters of genes whose expression levels correlate with pathological state. A key step in SVM-RCE is the use of an SVM classifier to assign an area under the curve (AUC) score to each gene cluster based on its ability to predict class labels. In this study, we investigate the use of alternative classifiers in the cluster-scoring step. Specifically, we compare Support Vector Machines, Random Forest, XgBoost, Naive Bayes, and linear logistic regression. In addition to AUC score performance evaluation, the algorithms are compared in terms of the number of selected genes at different levels of clustering and in terms of the running time. © 2023 Elsevier B.V., All rights reserved.
  • Conference Object
    Citation - Scopus: 4
    A Transfer Learning Application on the Reliability of Psychological Drugs' Comments
    (Institute of Electrical and Electronics Engineers Inc., 2023-07-25) Sen, Tarik Uveys; Bakal, Gokhan
    As digitalization and the Internet stay emerging concepts by gaining popularity, the accuracy of personal reviews/opinions will be a critical issue. This circumstance also particularly applies to patients taking psychological drugs, where accurate information is crucial for other patients and medical professionals. In this study, we analyze drug reviews from drugs.com to determine the effectiveness of reviews for psychological drugs. Our dataset includes over 200,000 drug reviews, which we labeled as positive, negative, or neutral according to their rating scores. We apply machine learning (ML) models, including Logistic Regression, Recurrent Neural Network (RNN), and Long Short-Term Memory (LSTM) algorithms, to predict the sentiment class of each review. Our results demonstrate an F1-Weighted score of 85.3% for the LSTM model. However, by applying the transfer learning technique, we further improved the F1 score (nearly 3% increase) obtained by the LSTM model. Our findings proved that there is no contextual difference between the comments made by the patients suffering from psychological or other diseases. © 2023 Elsevier B.V., All rights reserved.