Scopus İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395
Browse
31 results
Search Results
Conference Object Citation - WoS: 1Citation - Scopus: 1The Identification of Discriminative Single Nucleotide Polymorphism Sets for the Classification of Behcet's Disease(IEEE, 2018-09) Gormez, Yasin; Isik, Yunus Emre; Bakir-Gungor, BurcuBehcet's disease is a long-term multisystem inflammatory disorder, characterized by recurrent attacks affecting several organs. As the genotyping individuals get cheaper and easier following the developments in genomic technologies, genome-wide association studies (GWAS) emerged. By this means, via studying big-sized case-control groups for a specific disease, potential genetic variations, single nucleotide polymorphisms (SNPs) are identified. Although several genetic risk factors are identified for Behcet's disease with the help of these studies via scanning around a million of SNPs, these variations could only explain up to 200/u of the disease's genetic risk. In this study, for Behcet's disease classification, via comparing all the SNPs genotyped in GWAS, with the SNPs selected via using genetic knowledge, gain ratio and information gain; both reduction in the feature size and improvement in the classification accuracy is aimed. Also, using different classification algorithms such as random forest, k-nearest neighbour and logistic regression, their effects on the classification accuracy are investigated. Our results showed that compared to other feature selection methods, with at least 81% success rate, the selection of the SNPs using the genetic information (of their GWAS p-values, indicating the significance of the SNP against the disease) provides 15% to 42% improvement in all classification algorithms. This improvement is statistically sound. While gain ratio and information gain feature selection techniques yield similar classification accuracies, the models using all SNPs could not exceed 50% accuracies and results in the worst performance.Conference Object Citation - Scopus: 2Kısa Ve Orta Mesafe Gece Yangını Tespiti(Institute of Electrical and Electronics Engineers Inc., 2017-05) Agirman, Ahmet K.; Taşdemir, Kasím; Aggirman, Ahmet KerimComputer vision methods used for night-time fire detection are limited. Existing works are for detection of distant night fires recorded from watch towers. In this paper, detection of short to mid-range night fires from video cameras are aimed. Flames in short distance flicker, grow and move more rapidly compared to ones in long distance. Features obtained by taking advantage of these distinctions let us detect fire over 90% accuracy on average in videos containing deceptive light sources like common city lights and headlights of vehicles. © 2017 Elsevier B.V., All rights reserved.Conference Object Akciğer Tümörlü Hastaların PET ve BT Görüntülerinin Çakıştırılıp Birleştirilmesi(IEEE, 2015-10) Ayyildiz, Oguzhan; Yilmaz, Bulent; Karacavus, Seyhan; Kayaalti, Omer; Icer, Semra; Eset, Kubra; Kaya, EserImage fusion attracts attention in medical field due to complementary behavior and application such as diagnosis and treatment planning. In this study, first positron emission tomography (PET) and computed tomography (CT) images coming from 8 nonsmall cell lung cancer were registered then wavelet and principal component analysis methods were applied to fuse images. According to mutual information metric and nuclear medicine expert wavelet method gave better results when compared to PCA.Conference Object Citation - Scopus: 2Beyin Dalgalari ve Baş Hareketiyle Gerçek Zamanli Robotik Araba Kontrolü(Institute of Electrical and Electronics Engineers Inc., 2018-11) Oztürk, Nedime; Yilmaz, Bulent; Onver, Ahmet YasinEmotiv Epoc Headset is a portable and low-cost device. In this study, Emotiv Epoc headset was used in order to obtain real-time gyro and EEG signals. The aim of this study was to control a robotic car in real-time by using head movement and opening and closing of the eyes. The maximum and minimum amplitude of the gyro signal, and the ratios of the beta waves of O1 and O2 channel to alpha waves of the same channels were used as threshold values. These threshold values were used to determine the direction of the robotic car. Because of its low-cost and easy implementation, Arduino Uno was used to manage the robotic car. This study has shown that brain waves and head movements can control a device in real time. This system has the potential to be used in neurofeedback and brain-computer interface applications. © 2019 Elsevier B.V., All rights reserved.Conference Object Citation - Scopus: 3LTE Ağları için Servis Kalitesi Farkında Aşağı Yönlü Çizelgeleme Algoritması: Kenar Kullanıcıları Üzerine İnceleme(Institute of Electrical and Electronics Engineers Inc., 2017-05) Güngör, Vehbi Çağrı; Uyan, Osman Gokhan4G/LTE (Long Term Evolution) is the state of the art wireless mobile broadband technology. It makes use of the OFDM technology to offer high speed and provides the system resources both in time and frequency domain. A scheduling algorithm running on the base station holds the allocation of these resources. In this paper, the performance of existing downlink scheduling algorithms has been investigated in two ways. First, the performance of the algorithms has been investigated in terms of throughput and fairness metrics. Second, a new quality of service-aware (QoS-aware) fairness criterion, which accepts that the system is fair if it can provide the users with the network traffic speeds that they demand, has been proposed and evaluated. In addition, a novel QoS-aware downlink-scheduling algorithm, which increases the QoS-aware fairness and overall throughput of the edge users, has been proposed. © 2017 Elsevier B.V., All rights reserved.Conference Object Protein-Protein Etkilesim Ağlarinda Aktif Alt Ağ Arama Yöntemlerinin Performans Degerlendirmeleri(Institute of Electrical and Electronics Engineers Inc., 2019-09) Güner, Pinar; Bakir-Güngör, BurcuProtein-protein interaction networks are mathematical representations of the physical contacts between proteins in the cell. A group of interconnected proteins in a protein-protein interaction network that contains most of the disease associated proteins and some interacting other proteins is called an active subnetwork. Active subnetwork search is important to understand mechanisms underlying diseases. Active subnetworks are used to discover disease related regulatory pathways, functional modules and to classify diseases. In the literature there are many methods to search for active subnetworks. The purpose of this study is to compare the performance of different subnetwork identification methods. By using the Rheumatoid Arthritis dataset, the performances of greedy approach, genetic algorithm, simulated annealing algorithm, prize collecting steiner forest and game theory based subnetwork search methods are compared. © 2020 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 3Citation - Scopus: 13NSEM: Duygu Analizi için Özgün Yıǧınlanmiş Topluluk Yöntemi(Institute of Electrical and Electronics Engineers Inc., 2018-09) Işik, Yunus Emre; Görmez, Yasin; Kaynar, Oǧuz; Aydin, Zafer; Emre Isik, YunusToday, people often share their ideas, opinions and feelings through forums, social media sites, blogs and similar platforms. For this reason, access to these data has become very easy. Increase in the number of shares makes it possible to analyze and use these data in terms of marketing and politics. However, due to the large number of data, it is impossible that this analysis will be done by humans. Determination of what type of emotion is included automatically is done by sentiment analysis methods. In these methods, the text is defined as a mathematical vector and classified by machine learning methods. Ensemble methods are one of the most important methods used as classifiers in sentiment analysis. In these methods, a classifier error is tried to be solved by another classifier. In sentiment analysis, the feature vector that describes the text is as important as the classifier. Feature vectors obtained using different methods can make mistakes in different places. For this reason, in this study, NSEM is proposed for sentiment analysis, which is a new ensemble method that uses 2 different classifiers and 2 different feature extraction methods. As a result of the analysis, the proposed method is the most successful method with an accuracy rate of 79.1%. © 2019 Elsevier B.V., All rights reserved.Conference Object Image-Processing Based Signal Readout Method For MRD Biochip(Institute of Electrical and Electronics Engineers Inc., 2019-04) Uslu, Fatma; İçöz, Kutay; Taşdemir, KasímThe response of the cancer patients to chemotherapy treatment varies from person to person. For some patients cancer cells are resistant to treatment and these cells can relapse again which is known as minimal residual disease. A microfluidic-based biochip capable of monitoring minimal residual disease is under development by our research group. The role of the biochip is to capture the target cells, which were separated by immunomagnetic beads on micro square tiles. Then biochips are imaged using a bright field optical microscope and it is planned to perform image-processing methods to detect the target cells, immunomagnetic beads and micro tiles. In this work the current progress of image processing methods for differentiating the immunomagnetic beads and micro tiles is presented. © 2020 Elsevier B.V., All rights reserved.Conference Object Citation - Scopus: 5Enerji Hasadı ve Sıkıştırmalı Algılama Yapan Gizlilik Odaklı Sualtı Kablosuz Ağlarında Ömür Analizi(Institute of Electrical and Electronics Engineers Inc., 2019-04) Uyan, Osman Gokhan; Güngör, Vehbi ÇağrıUnderwater sensor networks (UWSN) are a division of classical wireless sensor networks (WSN), which are designed to accomplish both military and civil operations, such as invasion detection and underwater life monitoring. Underwater sensor nodes operate using the energy provided by integrated limited batteries, and it is a serious challenge to replace the battery under the water especially in harsh conditions with a high number of sensor nodes. Here, energy efficiency confronts as a very important issue. Besides energy efficiency, data privacy is another essential topic since UWSN typically generate delicate sensing data. UWSN can be vulnerable to silent positioning and listening, which is injecting similar adversary nodes into close locations to the network to sniff transmitted data. In this paper, we discuss the usage of compressive sensing (CS) and energy harvesting (EH) to improve the lifetime of the network whilst we suggest a novel encryption decision method to maintain privacy of UWSN. We also deploy a Mixed Integer Programming (MIP) model to optimize the encryption decision cases which leads to an improved network lifetime. © 2020 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 1Citation - Scopus: 3Endüstriyel Kablosuz Algılayıcı Ağlarda Hata Kontrol Sistemlerinin Ağ Yaşam Süresine Etkileri(IEEE, 2019-04) Tekin, Nazli; Gungor, V. CagriDue to the harsh channel conditions of the industrial environment, the data transmission over wireless channel suffers from erroneous packets. The energy consumption of error control schemes is of vital importance for battery-powered Wireless Sensor Networks (WSNs). In this paper, the performance evaluation of error control schemes namely, Automatic Repeat Request (ARQ), Forward Error Correction (FEC) and Hybrid ARQ (HARQ) in industrial environment in terms of energy efficiency is presented. The impact of the existing error control schemes on the industrial wireless sensor network lifetime is analyzed. A novel Mixed Integer Programming (MIP) framework is developed to maximize network lifetime. Performance results show that utilizing BCH (31,21,5) for Telos at the link layer maximizes the network lifetime while attaining the desired application reliability rate.