Scopus İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395
Browse
27 results
Search Results
Article Borax-Doped Fe2O3 and CeO2 Nanoparticles Regulate Dose-Dependently Inflammation, the Cell Cycle, and Migration in LPS-Activated THP-1 Cells(Wiley-VCH Verlag GmbH, 2026-03) Sulak, Mine; Ceylan Ekiz, Yağmur; Şen, Alaattin; Acar, Büşra; Çelik Turgut, Gurbet; Aktaş Pepe, NihanThis study examined the biological effects of borax-doped Fe2O3 and CeO2 nanoparticles (NPs) on lipopolysaccharide (LPS)-activated THP-1 cells. The morphology and composition of the nanocomposites were confirmed via scanning electron microscopy (SEM) and energy-dispersive x-ray spectroscopy (EDX). Cell viability (resazurin and crystal violet assays), apoptosis/necrosis (annexin V/propidium iodide [PI]), cell cycle (flow cytometry), migration (scratch assay), and inflammatory response (Iba1 immunofluorescence staining, inducible nitric oxide synthase [iNOS] activity, and RT-PCR) were evaluated. The particle sizes ranged from 21.34 to 33.47 nm (Fe2O3-B-NPs) and 31.07 to 36.62 nm (CeO2-B-NPs). The IC10 and IC50 dose ranges were defined for each nanocomposite and applied across different cell lines to evaluate dose-dependent biological effects. Fe2O3-B-NPs altered cell cycle progression, increasing the number of S phase cells. Both nanocomposites promoted migration at low doses but inhibited it at high doses. CeO2-B-NPs reduced Iba1 levels, whereas Fe2O3-B-NPs increased inflammatory marker levels at higher concentrations. CeO2-B-NPs suppressed TNF-alpha and IL-1 beta gene expression at the IC50 dose, while both nanocomposites reduced iNOS activity. These results indicate that the dose-dependent effects of nanocomposites should be carefully evaluated.Article Toward the Design of New Α-Carboline Derivatives Against Anaplastic Lymphoma Kinase (Alk): A Comprehensive in Silico Approach(Wiley-VCH Verlag GmbH, 2025-11) Sari, Ceyhun; Akcok, IsmailAfter the first description of anaplastic lymphoma kinase (ALK) in an anaplastic large cell lymphoma cell line as a nucleophosmin (NPM) fusion partner, ALK and its various fusion partners have been implicated in numerous cancers such as non-small cell lung cancer (NSCLC), anaplastic large cell lymphoma (ALCL), neuroblastoma, and rhabdomyosarcoma. In the last decade, several compounds targeting ALK have been developed and approved by the Food and Drug Administration (FDA). Despite the advances of generations of ALK inhibitors, a recent study highlighted that around half of the ALK-positive NSCLC patients will go through disease progression in response to first-line alectinib, which is a second-generation ALK inhibitor. In this study, we aimed to propose a novel alpha-carboline compound targeting the ALK tyrosine kinase domain to be used against various types of cancer in which ALK fusion proteins may be involved. In this regard, we designed more than 200 alpha-carboline derivatives and investigated their binding properties against ALK tyrosine kinase by using in silico protocols consisting of molecular docking studies, molecular dynamics simulations, MM/PBSA binding free energy calculation, and essential dynamics analysis. Considering the obtained results, we developed two promising candidates, compounds 208 & 209 with -9.05 and -9.80 binding energies, respectively, which demonstrated improved binding profiles over the course of a 300 ns simulation.Article Citation - WoS: 8Citation - Scopus: 8Thermo-Responsive Complexes of c-Myc Antisense Oligonucleotide With Block Copolymer of Poly(OEGMA) and Quaternized Poly(4-Vinylpyridine)(Wiley-VCH Verlag GmbH, 2016-11-03) Topuzogullari, Murat; Elalmis, Yeliz Basaran; Isoglu, Sevil DincerSolution behavior of thermo-responsive polymers and their complexes with biological macromolecules may be affected by environmental conditions, such as the concentration of macromolecular components, pH, ion concentration, etc. Therefore, a thermo-responsive polymer and its complexes should be characterized in detail to observe their responses against possible environments under physiological conditions before biological applications. To briefly indicate this important issue, thermo-responsive block copolymer of quaternized poly(4-vinylpyridine) and poly(oligoethyleneglycol methyl ether methacrylate) as a potential nonviral vector has been synthesized. Polyelectrolyte complexes of this copolymer with the antisense oligonucleotide of c-Myc oncogene are also thermo-responsive but, have lower LCST (lower critical solution temperature) values compared to individual copolymer. LCST values of complexes decrease with molar ratio of macromolecular components and presence of salt. Dilution of solutions also affects solution behavior of complexes and causes a significant decrease in size and an increase in LCST, which indicates possible effects of severe dilutions in the blood stream.Article Citation - WoS: 6Citation - Scopus: 7Therapeutic Potential of Nitrogen-Substituted Oleanolic Acid Derivatives in Neuroinflammatory and Cytokine Pathways: Insights From Cell-Based and Computational Models(Wiley-VCH Verlag GmbH, 2025-04-22) Turgut, Gurbet Celik; Pepe, Nihan Aktas; Ekiz, Yagmur Ceylan; Senol, Halil; Sen, AlaattinThis study was conducted to investigate the mechanism of the potential and anti-inflammatory properties of nitrogen-substituted oleanolic acid derivatives that can be used to treat neuroinflammatory diseases. Nitrogen-containing oleanolic acid derivatives have been evaluated for their anti-neuroinflammatory effects in vitro in neuronal and monocytic cell lines at nontoxic doses, and the production of cytokines (TNF-alpha, IL-6 and IL-17), the inflammatory enzyme induced nitric oxide synthase (iNOS) and NF-kappa B signalling under LPS-stimulated conditions, and the expression of genes associated with Alzheimer's disease have been assessed. In addition, molecular docking and molecular dynamics simulation assessments are conducted in silico. Key protein markers of neurodegenerative diseases, especially Alzheimer's disease and neuroinflammation, TAU protein levels, and microglial activation, as well as ionised calcium-binding adaptor protein-1 (IBA1) levels, were significantly reduced with the addition of oleanolic acid derivatives. LPS-induced NF-kappa B luciferase reporter activity and iNOS activity were significantly inhibited, approaching the levels in uninduced controls. The mRNA expression of proinflammatory cytokines critical for neuroinflammation, such as TNF-alpha, NF-kappa B, IL-6 and IL-17, was reduced twofold to sevenfold. Furthermore, the molecular docking and MD simulation analyses revealed potential interactions with the TNF-alpha and NF-kappa B proteins. These findings underscore the potential of oleanolic acid derivatives, particularly compound 16, as candidates for further development as therapeutic agents for neurodegenerative diseases associated with chronic inflammation.Article Citation - WoS: 3Citation - Scopus: 3Superior CdSe/ZnS@Fe2O3 Yolk-Shell Nanoparticles as Optically Active MRI Contrast Agents(Wiley-VCH Verlag GmbH, 2022-07) Ekici, Derya D.; Mutlugun, EvrenWe have developed a robust synthesis methodology for quantum dots (QDs) nanoparticles with magnetic properties designed for biomodal imaging. These nanocrsytlas consists of a semiconductor quantum dot core with engineered fluorescence, which is located in a paramagnetic iron oxide shell that acts as a magnetic resonance imaging (MRI) contrast agent. Yolk-shell CdSe/ZnS@Fe2O3 nanoparticles (NPs) are synthesized via sonochemical decomposition of iron pentacarbonyl (Fe(CO)(5)) using the oleylamine (OAm) as the ligand. The sonochemical synthesis method of magnetic fluorescent NPs that can be used as MRI contrast agents provided advantages such as improved quantum efficiency and homogeneous size distributions. It has been determined that the luminescence efficiency of quantum dots decreases in coatings that can be made at high temperatures by thermal decomposition. In order to eliminate the disadvantage of elevated temperatures, the sonochemical decomposition method, which allows coating at low temperatures, has been used. With this method, yolk-shell (CdSe/ZnS@Fe2O3) nanoparticles were produced with high photoluminescence quantum efficiency and homogeneous size distributions. The synthesis magnetic fluorescent NPs optimized was determined to have the injection temperature of Fe(CO)(5) at 60 degrees C, Fe(CO)(5)/CdSe@ZnS ratio 0.7, OAm/Fe(CO)(5) volume ratio 1.43 with an oxidation time 5 min. Under these conditions, the quantum efficiency was found to be 78 %, nanoparticle sizes between 11-14 nm and r(1) value was 0.199, r(2) value was 0.518 in MRI analysis. These optically active magnetic fluorescent nanoparticles as positive contrast agents (T1 weighted) are predicted to pave the way for the future of advanced bio-imaging systems.Article Citation - WoS: 1Citation - Scopus: 1Stochastic Orientational Encoding via Hydrogen Bonding Driven Assembly of Woven-Like Molecular Physically Unclonable Functions(Wiley-VCH Verlag GmbH, 2025-07-02) Kayaci, Nilgun; Kiremitler, Nuri Burak; Deneme, Ibrahim; Kalay, Mustafa; Ozbasaran, Aleyna; Zorlu, Yunus; Usta, HakanThe prevention of counterfeiting and the assurance of object authenticity require stochastic encoding schemes based on physically unclonable functions (PUFs). There is an urgent need for exceptionally large encoding capacities and multi-level responses within a molecularly defined, single-material system. Herein, a novel stochastic orientational encoding approach is demonstrated using a facile ambient-atmosphere solution processing of a molecular thin film based on the rod-shaped oligo(p-phenyleneethynylene) (OPE) pi-architecture. The nanoscopic film, derived from the small molecule 2EHO-CF3PyPE with donor, acceptor, and pi-spacer building units, is designed for energetically favorable uniaxial molecular assembly and crystal growth via directional multiple hydrogen-bonding motifs at the molecular termini and short C & horbar;H<middle dot><middle dot><middle dot>pi contacts at the center. A facile solvent vapor annealing induces concurrent dewetting and microscopic 1D random crystallization, yielding a woven-textured random features. Using convolutional neural networks, the rich variations in microcrystal domain properties and stochastic encoding of 1D crystal orientations generate artificial coloration, achieving an encoding capacity reaching (6.5 x 10(4))(2752 x 2208). The results demonstrate an effective strategy for achieving ultrahigh encoding capacities in a thin film composed of a single-material. This approach enables low-cost, solution-processed fabrication for mass production and broad adoption, while opening new opportunities to explore molecular-PUFs through structural design and engineering noncovalent interactions.Article Citation - WoS: 10Citation - Scopus: 11Recent Advances in CsPbX3 (X = Cl, Br, I) Perovskite NCs@Glass: Structures, Characterizations, and Applications(Wiley-VCH Verlag GmbH, 2025-04-07) Samiei, Sadaf; Lin, Jidong; Soheyli, Ehsan; Nabiyouni, Gholamreza; Chen, DaqinEncapsulation of perovskite nanocrystals (PeNCs) within metal oxide glasses and fabrication of PeNCs@glass composites has emerged as a transformative approach to enhance the stability and functionality of these promising luminescent materials. This review comprehensively examines the current state of research on encapsulation techniques, highlighting their effectiveness in preserving the structural integrity, and optical properties of PeNCs. The advantages and mechanisms by which metal oxide glasses mitigate the degradation of PeNCs are discussed and the tunable properties of metal oxide glass structures for optimizing the photoluminescence and quantum efficiency of encapsulated PeNCs are explored. The review further explores the various experimental techniques for characterizing composites made by nanoscale extreme crystalline species within the short-range ordered (amorphous) microstructures. As the ultimate aim of any advanced material for commercialization, diverse optoelectronic devices of these encapsulated systems, emphasize the potential for improved device performance and longevity. Finally, key challenges and future directions in the field are identified, including the need for scalable fabrication methods and the exploration of novel glass compositions to enhance the encapsulation efficacy. This review aims to provide a comprehensive overview of the advancements in the encapsulation of PeNCs with metal oxide glasses, underscoring their significance in developing next-generation optoelectronic devices.Article Citation - WoS: 128Citation - Scopus: 136Record High External Quantum Efficiency of 19.2% Achieved in Light-Emitting Diodes of Colloidal Quantum Wells Enabled by Hot-Injection Shell Growth(Wiley-VCH Verlag GmbH, 2019-12-23) Liu, Baiquan; Altintas, Yemliha; Wang, Lin; Shendre, Sushant; Sharma, Manoj; Sun, Handong; Demir, Hilmi VolkanColloidal quantum wells (CQWs) are regarded as a highly promising class of optoelectronic materials, thanks to their unique excitonic characteristics of high extinction coefficients and ultranarrow emission bandwidths. Although the exploration of CQWs in light-emitting diodes (LEDs) is impressive, the performance of CQW-LEDs lags far behind other types of soft-material LEDs (e.g., organic LEDs, colloidal-quantum-dot LEDs, and perovskite LEDs). Herein, high-efficiency CQW-LEDs reaching close to the theoretical limit are reported. A key factor for this high performance is the exploitation of hot-injection shell (HIS) growth of CQWs, which enables a near-unity photoluminescence quantum yield (PLQY), reduces nonradiative channels, ensures smooth films, and enhances the stability. Remarkably, the PLQY remains 95% in solution and 87% in film despite rigorous cleaning. Through systematically understanding their shape-, composition-, and device-engineering, the CQW-LEDs using CdSe/Cd0.25Zn0.75S core/HIS CQWs exhibit a maximum external quantum efficiency of 19.2%. Additionally, a high luminance of 23 490 cd m(-2), extremely saturated red color with the Commission Internationale de L'Eclairage (CIE) coordinates of (0.715, 0.283), and stable emission are obtained. The findings indicate that HIS-grown CQWs enable high-performance solution-processed LEDs, which may pave the path for future CQW-based display and lighting technologies.Article Citation - WoS: 15Citation - Scopus: 16Quartz-Crystal Microbalance Measurements of Cd19 Antibody Immobilization on Gold Surface and Capturing B Lymphoblast Cells: Effect of Surface Functionalization(Wiley-VCH Verlag GmbH, 2018-02-05) Icoz, Kutay; Soylu, Mehmet Cagri; Canikara, Zeynep; Unal, EkremWe have investigated different surface functionalization methods to immobilize CD19 antibody on gold surface to capture B lymphoblast cells associated with the acute lymphoblastic leukemia disease. Quartz Crystal Microbalance measurements were performed to analyze the binding kinetics of each layer and determine the optimum method, which results in higher cell capture rates. The random orientation of antibody and oriented antibody through protein G was investigated and protein G presence resulted in 15,2Hz frequency shift for 10(4)cells/mL. The 3-mercaptopropyltrimethoxysilane (MPS) and 11-Mercaptoundecanoic acid (MUA) coatings of gold surface together with 4-(N-Maleimidomethyl)cyclohexane-1-carboxylic acid 3-sulfo-N-hydroxysuccinimide ester sodium salt (Sulfo-SMCC) and N-Ethyl-N'-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC)/N-hydroxysulfosuccinimide (NHS) linker layers were tested on QCM for protein G and antibody binding. The results indicate that MUA, EDC/NHS, protein G, antibody CD19 is the optimum surface modification among the tested combinations. By using the optimum surface functionalization method, minimum 10(3) cell per mL was measured as 1.9Hz frequency shift.Article Citation - WoS: 88Citation - Scopus: 83Organic Light-Emitting Physically Unclonable Functions(Wiley-VCH Verlag GmbH, 2021-12-22) Kayaci, Nilgun; Ozdemir, Resul; Kalay, Mustafa; Kiremitler, N. Burak; Usta, Hakan; Onses, M. SerdarThe development of novel physically unclonable functions (PUFs) is of growing interest and fluorescent organic semiconductors (f-OSCs) offer unique advantages of structural versatility, solution-processability, ease of processing, and great tuning ability of their physicochemical/optoelectronic/spectroscopic properties. The design and ambient atmosphere facile fabrication of a unique organic light-emitting physically unclonable function (OLE-PUF) based on a green-emissive fluorescent oligo(p-phenyleneethynylene) molecule is reported. The OLE-PUFs have been prepared by one-step, brief (5 min) thermal annealing of spin-coated nanoscopic films (approximate to 40 nm) at a modest temperature (170 degrees C), which results in efficient surface dewetting to form randomly positioned/sized hemispherical features with bright fluorescence. The random positioning of molecular domains generated the unclonable surface with excellent uniformity (0.50), uniqueness (0.49), and randomness (p > 0.01); whereas the distinctive photophysical and structural properties of the molecule created the additional security layers (fluorescence profile, excited-state decay dynamics, Raman mapping/spectrum, and infrared spectrum) for multiplex encoding. The OLE-PUFs on substrates of varying chemical structures, surface energies and flexibility, and direct deposition on goods via drop-casting are demonstrated. The OLE-PUFs immersed in water, exposed to mechanical abrasion, and read-out repeatedly via fluorescence imaging showed great stability. These findings clearly demonstrate that rationally engineered solution-processable f-OSCs have a great potential to become a key player in the development of new-generation PUFs.
- «
- 1 (current)
- 2
- 3
- »