Scopus İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395
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Conference Object Citation - WoS: 11Citation - Scopus: 20ROI Detection in Mammogram Images Using Wavelet-Based Haralick and Hog Features(IEEE, 2018-12) Tasdemir, Sena Busra Yengec; Tasdemir, Kasim; Aydin, Zafer; Yengec Tasdemir, Sena BusraDigital mammography is a widespread medical imaging technique that is used for early detection and diagnosis of breast cancer. Detecting the region of interest (ROI) helps to locate the abnormal areas, which may be analyzed further by a radiologist or a CAD system. In this paper, a new classification method is proposed for ROI detection in mammography images. Features are extracted using Wavelet transform, Haralick and HOG descriptors. To reduce the number of dimensions and eliminate irrelevant features, a wrapper-based feature selection method is implemented. Several feature extraction methods and machine learning classifiers are compared by performing a leave-one-image-out cross-validation experiment on a difficult dataset. The proposed feature extraction method provides the best accuracy of 87.5% and the second-best area under curve (AUC) score of 84% when employed in a random forest classifier.Conference Object Citation - Scopus: 3Mixture of Learners for Cancer Stem Cell Detection Using Cd13 and H&E Stained Images(SPIE - The International Society for Optics and Photonics, 2016-03-23) Oguz, Oguzhan; Akbas, Cem Emre; Mallah, Maen; Tasdemir, Kasim; Guzelcan, Ece Akhan; Muenzenmayer, Christian; Atalay, Rengul Cetin; Akhan Güzelcan, Ece; Tagdemir, KaslmIn this article, algorithms for cancer stem cell (CSC) detection in liver cancer tissue images are developed. Conventionally, a pathologist examines of cancer cell morphologies under microscope. Computer aided diagnosis systems (CAD) aims to help pathologists in this tedious and repetitive work. The first algorithm locates CSCs in CD13 stained liver tissue images. The method has also an online learning algorithm to improve the accuracy of detection. The second family of algorithms classify the cancer tissues stained with H&E which is clinically routine and cost effective than immunohistochemistry (IHC) procedure. The algorithms utilize 1D-SIFT and eigen-analysis based feature sets as descriptors. Normal and cancerous tissues can be classified with 92.1% accuracy in H&E stained images. Classification accuracy of low and high-grade cancerous tissue images is 70.4%. Therefore, this study paves the way for diagnosing the cancerous tissue and grading the level of it using HSLE stained microscopic tissue images.Article Citation - WoS: 22Citation - Scopus: 29Automated Quantification of Immunomagnetic Beads and Leukemia Cells from Optical Microscope Images(Elsevier Sci Ltd, 2019-03) Uslu, Fatma; Icoz, Kutay; Tasdemir, Kasim; Yilmaz, BulentQuantification of tumor cells is crucial for early detection and monitoring the progress of cancer. Several methods have been developed for detecting tumor cells. However, automated quantification of cells in the presence of immunomagnetic beads has not been studied. In this study, we developed computer vision based algorithms to quantify the leukemia cells captured and separated by micron size immunomagnetic beads. Color, size based object identification and machine learning based methods were implemented to quantify targets in the images recorded by a bright field microscope. Images acquired by a 40x or a 20x objective were analyzed, the immunomagnetic beads were detected with an error rate of 0.0171 and 0.0384 respectively. Our results reveal that the proposed method attains 91.6% precision for the 40x objective and 79.7% for the 20x objective. This algorithm has the potential to be the signal readout mechanism of a biochip for cell detection. (C) 2019 Elsevier Ltd. All rights reserved.Article Citation - WoS: 16Citation - Scopus: 15A Review of Mammographic Region of Interest Classification(Wiley Periodicals, inc, 2020-02-18) Yengec Tasdemir, Sena B.; Tasdemir, Kasim; Aydin, ZaferEarly detection of breast cancer is important and highly valuable in clinical practice. X-ray mammography is broadly used for prescreening the breast and is also attractive due to its noninvasive nature. However, experts can misdiagnose a significant proportion of the cases, which may either cause redundant examinations or cancer. In order to reduce false positive and negative rates of mammography screening, computer-aided breast cancer detection has been studied for more than 30 years and many methods have been proposed by the researchers. In this review, region of interest (ROI) classification methods, which operate on a predefined or segmented ROIs with a focus on mass classification are surveyed. A total of 72 high quality journal and conference papers are selected from the Web of Science (WOS) database that meet several inclusion criteria. A comparative analysis is provided based on ROI extraction methods, data sets and machine learning techniques employed, the prediction accuracies, and usage frequency statistics. Based on the performances obtained on publicly available data sets, the ROI classification problem from mammogram images can be considered as approaching to be solved. Nonetheless, it can still be used as complementary information in breast cancer detection from the whole mammograms, which has room for improvement. This article is categorized under: Application Areas > Science and Technology Technologies > Machine Learning Technologies > Classification