Scopus İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/395
Browse
17 results
Search Results
Article BrAIn: A Comprehensive Artificial Intelligence-Based Morphology Analysis System for Brain Organoids and Neuroscience(Wiley, 2026-03-12) Polatli, Elifsu; Guner, Huseyin; Bastanlar, Yalin; Karakulah, Gokhan; Evranos, Ali Eren; Kahveci, Burak; Guven, SinanHuman-induced pluripotent stem cells (iPSCs) offer transformative potential for biomedical research, with iPSC-derived organoids providing more physiologically relevant models than traditional 2D cell cultures. Among these, brain organoids (BO) are particularly valuable for drug screening, disease modeling, and investigations into molecular pathways. Accurate representation of brain morphology is critical, as more complex organoid structures better mimic the human brain. Deep learning (DL) and machine learning (ML) approaches have become integral to analyzing organoid morphology, yet tools for comprehensive, time-resolved assessments are scarce. Here, we introduce BrAIn, a DL-based application for analyzing the developmental progression of BOs. BrAIn tracks their evolution from embryoid bodies (EBs) and quantifies parameters including area, Feret diameter, perimeter, roundness, and circularity. It also classifies budding and abnormal morphologies of 3D organoids and detects monolayer neural rosette structures, key features of neuronal differentiation. Designed with accessibility in mind, BrAIn provides a no-code interface, enabling researchers of all technical backgrounds to conduct advanced morphological analyses with ease. Our study demonstrates the application of BrAIn to evaluate the effects of different growth conditions-static, orbital shaker, and microfluidic chip-based-on BO development. Orbital shaker cultures resulted in the largest organoids, while chip-based systems achieved more homogeneous growth. Both conditions produced organoids with greater morphological complexity compared to static culture. BrAIn emerges as a robust, user-friendly tool to quantify BO development and explore how versatile growth conditions influence their morphology and maturation.Article Citation - Scopus: 5University Librarians’ Perceptions Of Artificial Intelligence, Its Application Areas İn Libraries, And The Future(University and Research Librarians Association (UNAK), 2024-12-26) Cuhadar, S.; Mert, S.; Gezer, Ç.; Helvacioğlu, E.; Arus, O.; Aslan, Ö.; Atli, S.; Gurdal, Gultekin; Erken, MehmetToday, libraries are among the institutions affected by changing technology and innovations. The popularization of artificial intelligence (AI) technologies has also begun to transform library services. In this research, a survey was conducted to determine the adjustments that university libraries in Turkey have made and plan to make during the development process of AI technologies and applications, and to identify the services they have developed specific to the relevant period. The survey was carried out with the participation of 111 university library managers from 208 university libraries in Turkey. Through the analysis of the data, the status, knowledge, and awareness levels of university libraries regarding AI technologies and applications were determined, and measures and recommendations were presented to improve deficiencies and weaknesses. This research is the first and most comprehensive study conducted in Turkey by obtaining opinions and suggestions from university library managers on artificial intelligence. The research findings revealed that university libraries use AI applications such as ChatGPT, Gemini, and Grammarly to a certain extent; however, they have needs in developing institutional policies, enhancing personnel competencies, and planning related to AI. © 2024 University and Research Librarians Association (UNAK). All rights reserved.Article Citation - WoS: 1Citation - Scopus: 1Prediction of the Diffusible Hydrogen Concentration After Electrochemical Charging Utilizing Artificial Intelligence(IOP Publishing Ltd, 2025-09-01) Sivesoglu, Abdurrahman; Li, Yang; Bal, BurakThe concentration of diffusible hydrogen in a material is of high importance as it helps to predict the hydrogen embrittlement effect in the material, and the amount of mechanical properties' degradation after reaching a critical concentration. Despite that, a simple experimental setup is not available to measure hydrogen concentration at service. In this paper, a multi-layer perceptron (MLP) model is developed using weight initialization, which can estimate the diffusible hydrogen concentration of Face-Centred-Cubic (FCC) metals after electrochemical charging. The input properties of the model include the electrochemical charging parameters of current density, temperature, and charging time as well as the grain size of the specimen. The MLP model with and without the weight initialization was validated and tested with unseen test dataset. The model in both cases showed an excellent predictive performance with a higher accuracy and faster convergence when using weight initialization. A linear correlation of 89% between the experimental and predicted hydrogen concentration was observed. This demonstrates that for the family of FCC metals under electrochemical charging, the estimation of diffusible hydrogen concentration is a feasible path for material safety design analysis.Article Citation - WoS: 9Citation - Scopus: 13The Impact and Future of Artificial Intelligence in Medical Genetics and Molecular Medicine: An Ongoing Revolution(Springer Heidelberg, 2024-08) Ozcelik, Firat; Dundar, Mehmet Sait; Yildirim, A. Baki; Henehan, Gary; Vicente, Oscar; Sanchez-Alcazar, Jose A.; Dundar, MunisArtificial intelligence (AI) platforms have emerged as pivotal tools in genetics and molecular medicine, as in many other fields. The growth in patient data, identification of new diseases and phenotypes, discovery of new intracellular pathways, availability of greater sets of omics data, and the need to continuously analyse them have led to the development of new AI platforms. AI continues to weave its way into the fabric of genetics with the potential to unlock new discoveries and enhance patient care. This technology is setting the stage for breakthroughs across various domains, including dysmorphology, rare hereditary diseases, cancers, clinical microbiomics, the investigation of zoonotic diseases, omics studies in all medical disciplines. AI's role in facilitating a deeper understanding of these areas heralds a new era of personalised medicine, where treatments and diagnoses are tailored to the individual's molecular features, offering a more precise approach to combating genetic or acquired disorders. The significance of these AI platforms is growing as they assist healthcare professionals in the diagnostic and treatment processes, marking a pivotal shift towards more informed, efficient, and effective medical practice. In this review, we will explore the range of AI tools available and show how they have become vital in various sectors of genomic research supporting clinical decisions.Article Citation - WoS: 22Citation - Scopus: 26Recent Advances in Machine Learning for Network Automation in the O-RAN(MDPI, 2023-10-28) Hamdan, Mutasem Q.; Lee, Haeyoung; Triantafyllopoulou, Dionysia; Borralho, Ruben; Kose, Abdulkadir; Amiri, Esmaeil; Tafazolli, RahimThe evolution of network technologies has witnessed a paradigm shift toward open and intelligent networks, with the Open Radio Access Network (O-RAN) architecture emerging as a promising solution. O-RAN introduces disaggregation and virtualization, enabling network operators to deploy multi-vendor and interoperable solutions. However, managing and automating the complex O-RAN ecosystem presents numerous challenges. To address this, machine learning (ML) techniques have gained considerable attention in recent years, offering promising avenues for network automation in O-RAN. This paper presents a comprehensive survey of the current research efforts on network automation usingML in O-RAN.We begin by providing an overview of the O-RAN architecture and its key components, highlighting the need for automation. Subsequently, we delve into O-RAN support forML techniques. The survey then explores challenges in network automation usingML within the O-RAN environment, followed by the existing research studies discussing application of ML algorithms and frameworks for network automation in O-RAN. The survey further discusses the research opportunities by identifying important aspects whereML techniques can benefit.Article Citation - WoS: 244Citation - Scopus: 325Productive Employment and Decent Work: The Impact of AI Adoption on Psychological Contracts, Job Engagement and Employee Trust(Elsevier Science inc, 2021-07) Braganza, Ashley; Chen, Weifeng; Canhoto, Ana; Sap, SerapThis research examines the tension between the aims of the United Nations' Sustainable Development Goal 8 (SDG 8), to promote productive employment and decent work, and the adoption of Artificial Intelligence (AI). Our findings are based on the analysis of 232 survey results, where we tested the effects of AI adoption on workers' psychological contract, engagement and trust. We find that psychological contracts had a significant, positive effect on job engagement and on trust. Yet, with AI adoption, the positive effect of psychological contracts fell significantly. A further re-examination of the extant literature leads us to posit that AI adoption fosters the creation of a third type of psychological contract, which we term "Alienational". Whereas SDG 8 is premised on strengthening relational contracts between an organization and its employees, the adoption of AI has the opposite effect, detracting from the very nature of decent work.Article Citation - WoS: 3Citation - Scopus: 4Prediction of Biomechanical Properties of Ex Vivo Human Femoral Cortical Bone Using Raman Spectroscopy and Machine Learning Algorithms(Elsevier, 2025-09) Unal, Mustafa; Unlu, Ramazan; Uppuganti, Sasidhar; Nyman, Jeffry S.This study applied Raman spectroscopy (RS) to ex vivo human cadaveric femoral mid-diaphysis cortical bone specimens (n = 118 donors; age range 21-101 years) to predict fracture toughness properties via machine learning (ML) models. Spectral features, together with demographic variables (age, sex) and structural parameters (cortical porosity, volumetric bone mineral density), were fed into support vector regression (SVR), extreme tree regression (ETR), extreme gradient boosting (XGB), and ensemble models to predict fracture-toughness metrics such as crack-initiation toughness (Kinit) and energy-to-fracture (J-integral). Feature selection was based on Raman-derived mineral and organic matrix parameters, such as nu 1Phosphate (PO4)/CH2-wag, nu 1PO4/ Amide I, and others, to capture the complex composition of bone. Our results indicate that ensemble models consistently outperformed individual models, with the best performance for crack initiation toughness (Kinit) prediction being achieved using the ensemble approach. This yielded a coefficient of determination (R2) of 0.623, root-mean squared error (RMSE) of 1.320, mean absolute error (MAE) of 1.015, and mean percentage absolute error (MAPE) of 0.134. For prediction of the overall energy to propagate a crack (J-integral), the XGB model achieved an R2 of 0.737, RMSE of 2.634, MAE of 2.283, and MAPE of 0.240. This study highlights the importance of incorporating mineral quality properties (MP) and organic matrix properties (OMP) for enhanced prediction accuracy. This work represents the first-ever study combining Raman spectroscopy with other clinical and structural features to predict fracture toughness of human cortical bone, demonstrating the potential of artificial intelligence (AI) and ML in advancing bone research. Future studies could focus on larger datasets and more advanced modeling techniques to further improve predictive capabilities.Article Citation - WoS: 53Citation - Scopus: 70Machine Learning-Based Intrusion Detection for Achieving Cybersecurity in Smart Grids Using IEC 61850 Goose Messages(MDPI, 2021-05-08) Ustun, Taha Selim; Hussain, S. M. Suhail; Ulutas, Ahsen; Onen, Ahmet; Roomi, Muhammad M.; Mashima, Daisuke; Suhail Hussain, S.M.Increased connectivity is required to implement novel coordination and control schemes. IEC 61850-based communication solutions have become popular due to many reasons-object-oriented modeling capability, interoperable connectivity and strong communication protocols, to name a few. However, communication infrastructure is not well-equipped with cybersecurity mechanisms for secure operation. Unlike online banking systems that have been running such security systems for decades, smart grid cybersecurity is an emerging field. To achieve security at all levels, operational technology-based security is also needed. To address this need, this paper develops an intrusion detection system for smart grids utilizing IEC 61850's Generic Object-Oriented Substation Event (GOOSE) messages. The system is developed with machine learning and is able to monitor the communication traffic of a given power system and distinguish normal events from abnormal ones, i.e., attacks. The designed system is implemented and tested with a realistic IEC 61850 GOOSE message dataset under symmetric and asymmetric fault conditions in the power system. The results show that the proposed system can successfully distinguish normal power system events from cyberattacks with high accuracy. This ensures that smart grids have intrusion detection in addition to cybersecurity features attached to exchanged messages.Article Citation - WoS: 1Citation - Scopus: 2Is Artificial Intelligence a Trustworthy Route Navigation System for Smart Urban Planning(Univ Alexandru Ioan Cuza, Centrul Studii Europene, 2024) Kourtit, Karima; Nijkamp, Peter; Osth, John; Turk, UmutIn the age of smart or intelligent cities, the use of Artificial Intelligence (AI) presents a spectrum of new opportunities and challenges for both the research and policy community. The present study explores the intricate interplay between AI-generated content and actual choice spectra in urban planning. It focuses on the concept of 'city intelligence' and related AI concepts, underscoring the pivotal role of AI in addressing and understanding the quality of life in contemporary urban environments. As AI continues its transformative impact on communication and information systems in the realm of urban planning, this study brings to the forefront key insights into the challenges of validating AI-based information. Given the inherently subjective nature of AIgenerated content, and its influential role in shaping user-perceived value, AI will most likely be a game changer catalyzing enhancements in the urban quality of life and inducing favorable urban developments. Additionally, the study also addresses the significance of the so-called 'Garbage-in Garbage-out' (GiGo) principle and 'Bullshitin Bullshit out' (BiBo) principle in validating AI-generated content, and seeks to enhance our understanding of the spatial information landscape in urban planning by introducing the notion of an urban X'XQ' performance production function.Article Citation - WoS: 15Citation - Scopus: 18Histopathology Image Classification: Highlighting the Gap Between Manual Analysis and AI Automation(Frontiers Media S.A., 2024-01-17) Dogan, Refika Sultan; Yilmaz, BulentThe field of histopathological image analysis has evolved significantly with the advent of digital pathology, leading to the development of automated models capable of classifying tissues and structures within diverse pathological images. Artificial intelligence algorithms, such as convolutional neural networks, have shown remarkable capabilities in pathology image analysis tasks, including tumor identification, metastasis detection, and patient prognosis assessment. However, traditional manual analysis methods have generally shown low accuracy in diagnosing colorectal cancer using histopathological images. This study investigates the use of AI in image classification and image analytics using histopathological images using the histogram of oriented gradients method. The study develops an AI-based architecture for image classification using histopathological images, aiming to achieve high performance with less complexity through specific parameters and layers. In this study, we investigate the complicated state of histopathological image classification, explicitly focusing on categorizing nine distinct tissue types. Our research used open-source multi-centered image datasets that included records of 100.000 non-overlapping images from 86 patients for training and 7180 non-overlapping images from 50 patients for testing. The study compares two distinct approaches, training artificial intelligence-based algorithms and manual machine learning models, to automate tissue classification. This research comprises two primary classification tasks: binary classification, distinguishing between normal and tumor tissues, and multi-classification, encompassing nine tissue types, including adipose, background, debris, stroma, lymphocytes, mucus, smooth muscle, normal colon mucosa, and tumor. Our findings show that artificial intelligence-based systems can achieve 0.91 and 0.97 accuracy in binary and multi-class classifications. In comparison, the histogram of directed gradient features and the Random Forest classifier achieved accuracy rates of 0.75 and 0.44 in binary and multi-class classifications, respectively. Our artificial intelligence-based methods are generalizable, allowing them to be integrated into histopathology diagnostics procedures and improve diagnostic accuracy and efficiency. The CNN model outperforms existing machine learning techniques, demonstrating its potential to improve the precision and effectiveness of histopathology image analysis. This research emphasizes the importance of maintaining data consistency and applying normalization methods during the data preparation stage for analysis. It particularly highlights the potential of artificial intelligence to assess histopathological images.