Alkan, Fahri
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Alkan, Fahri
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01. Abdullah Gül University
Mühendislik Fakültesi
Malzeme Bilimi ve Nanoteknoloji Mühendisliği
Mühendislik Fakültesi
Malzeme Bilimi ve Nanoteknoloji Mühendisliği
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15
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13
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370
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368
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24.67
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1
| Journal | Count |
|---|---|
| ACS Applied Materials & Interfaces | 1 |
| Angewandte Chemie-International Edition | 1 |
| Journal of Chemical Physics | 1 |
| Journal of Materials Chemistry C | 1 |
| Journal of Molecular Modeling | 1 |
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Doctoral Thesis Bor Esaslı Nano Yapıların Modellenmesi ve İncelenmesi(Abdullah Gül Üniversitesi, Fen Bilimleri Enstitüsü, 2022) Tahaoğlu, Duygu; Durandurdu, Murat; Alkan, FahriPolyhedral boron clusters and their applications have been subject to research in many fields such as medicine, materials science, catalytic applications, energy studies, etc. These molecules owe their popularity to their exceptional 3D stable structures, as well as their various sought-after properties in many applications. This doctoral thesis was prepared within the focus of a computational investigation of different polyhedral borane and carborane clusters by using DFT methods. The results of our studies were reported in two main chapters (Chapters 3 and 4). In the first part (Chapter 3), theoretical evaluation of relative stabilities and electronic structure for [BnXn]2− clusters were provided. The structural and electronic characteristics of [BnXn]2− clusters were examined by comparison with the [B12X12]2− counterparts with a focus on the substituent effects (X = H, F, Cl, Br, CN, BO, OH, NH2). The effects of the substituents were discussed in relation to their mesomeric (±M) and inductive (±I) effects. The results showed that the icosahedral barrier can be reduced through substitution by destabilizing the [B12X12]2−cluster with symmetry-reducing ligands or ligands with +M effects rather than stabilizing the larger clusters. In the second part (Chapter 4), the investigation of the photophysical properties of carborane-containing luminescent systems was presented. The o-CB-Anth system is known to exhibit a dual-emission property by radiating in the visible region from two low energy conformations with local excited (LE) and hybridized local and charge transfer (HLCT) characters, however, it shows a very low emission quantum yield in solution state similar to many other CB-luminescent systems. In this section, the excited-state potential energy surface (PES) of o-CB-Anth and o-CB-Pent were investigated in detail and the effect of a low-lying CT on the low quantum yield was discussed.Article Citation - WoS: 51Citation - Scopus: 52Dicarboxylic Acids Induced Tandem Transformation of Silver Nanocluster(Amer Chemical Soc, 2023) Wang, Zhi; Gupta, Rakesh Kumar; Alkan, Fahri; Han, Bao-Liang; Feng, Lei; Huang, Xian-Qiang; Sun, DiStructural transformation of metal nanoclusters (NCs) is of great ongoing interest regarding their synthesis, stability, and reactivity. Although sporadic examples of cluster transformations have been reported, neither the underlying transformation mechanism nor the intermediates are unambiguous. Herein, we have synthesized a flexible 54-nuclei silver cluster (Ag54) by combining soft ((BuC)-Bu-t=C-) and hard ((PrCOO-)-Pr-n) ligands. The existence of weakly coordinated nPrCOO(-) enhances the reactivity of Ag54, thus facilitating the dicarboxylic acid to induce structural transformation. X-ray structural analyses reveal that Ag54 transforms to Ag-28 cluster-based 2D networks (Ag28a and Ag28b) induced by H(2)suc (succinic acid) and H(2)glu (glutaric acid), whereas with H(2)pda (2,2'-(1,2-phenylene)diacetic acid), a discrete Ag-28 cluster (Ag28c) is isolated. The key intermediate Ag17 that emerges during the self-dissociation of Ag54 was isolated by using cryogenic recrystallization and characterized by X-ray crystallography. The "tandem transformation" mechanism for the structure evolution from Ag54 to Ag28a is established by time-dependent electrospray ionization mass spectrometry (ESIMS) and UV-vis spectroscopy. In addition, the catalytic activity in the 4-nitrophenol reduction follows the sequence Ag28c > Ag28b > Ag28a > Ag54 due to more bare silver sites on the surface of the Ag-28 cluster unit. Our findings not only open new avenues to the synthesis of silver NCs but also shed light on a better understanding of the structural transformation mechanism from one cluster to another or cluster-based metal-organic networks induced by dicarboxylates.Article Citation - WoS: 13Citation - Scopus: 16TD-DFTB Study of Optical Properties of Silver Nanoparticle Homodimers and Heterodimers(Amer Inst Physics, 2020) Liu, Zhen; Alkan, Fahri; Aikens, Christine M.The absorption spectra for face-centered cubic nanoparticle dimers at various interparticle distances are investigated using time-dependent density functional tight binding. Both homodimers and heterodimers are investigated in this work. By studying nanoparticles at various interparticle distances and analyzing their vertical excitations, we found that as the interparticle distance decreases, a red shift arises from contributions of the transition dipole moment that are aligned along the z-axis with nondegenerate features; blue shifts occur for peaks that originate from transition dipole moment components in the x and y directions with double degeneracy. When the nanoparticles are similar in size, the features in the absorption spectra become more sensitive to the interparticle distances. The best-fit curves from vertical excitation energy in the form of AR(-b) for Delta E-redshift/Delta E-blueshift vs R are determined. In this way, we determined trends for absorption peak shifts and how these depend on the interparticle distance.Article Citation - WoS: 56Citation - Scopus: 52Atomically Precise Gold Nanoclusters at the Molecular-to Transition With Intrinsic Chirality From Surface Layers(Nature Portfolio, 2023) Liu, Li-Juan; Alkan, Fahri; Zhuang, Shengli; Liu, Dongyi; Nawaz, Tehseen; Guo, Jun; He, JianChiral metal nanoclusters prepared from achiral ligands generally contain chiral kernel structures. Here, the authors report an alternative type of gold nanoclusters whose intrinsic chirality arises solely from the arrangement of the organic components on their surface. The advances in determining the total structure of atomically precise metal nanoclusters have prompted extensive exploration into the origins of chirality in nanoscale systems. While chirality is generally transferrable from the surface layer to the metal-ligand interface and kernel, we present here an alternative type of gold nanoclusters (138 gold core atoms with 48 2,4-dimethylbenzenethiolate surface ligands) whose inner structures are not asymmetrically induced by chiral patterns of the outermost aromatic substituents. This phenomenon can be explained by the highly dynamic behaviors of aromatic rings in the thiolates assembled via pi - pi stacking and C - H center dot center dot center dot pi interactions. In addition to being a thiolate-protected nanocluster with uncoordinated surface gold atoms, the reported Au-138 motif expands the size range of gold nanoclusters having both molecular and metallic properties. Our current work introduces an important class of nanoclusters with intrinsic chirality from surface layers rather than inner structures and will aid in elucidating the transition of gold nanoclusters from their molecular to metallic states.Article Citation - WoS: 12Citation - Scopus: 10Understanding the Effect of Symmetry Breaking on Plasmon Coupling From TDDFT(Amer Chemical Soc, 2021) Alkan, Fahri; Aikens, Christine M.We perform a time-dependent density functional theory (TDDFT) investigation for the optical properties of nanorod assemblies for different sizes (Ag-10, Ag-59, and Ag-139), interparticle distances, and orientations with a focus on the effect of symmetry breaking via an angle on plasmon coupling. For the model systems, the angle (theta) between the particles is varied between 0 and 180 degrees, where theta = 0 degrees and theta = 180 degrees correspond to symmetric side-by-side and end-to-end orientations of the nanorods, respectively. Our analysis reveals that for a sufficiently large interparticle distance (r > 0.7 nm), where the wave-function overlap between monomers is negligible, TDDFT results agree quite well with the predictions of the dipole-dipole interaction model for the intensity of the different modes of coupled plasmons. For smaller gap distances (0.4-0.5 nm), a charge-transfer plasmon (CTP) mode occurs for the symmetry broken case of the Ag-10 dimer. For the assemblies of larger nanorods, however, the CTP mode is predicted to be less pronounced, especially for the cases where the deviation from the end-to-end geometry is larger than 30 degrees. The orbital overlap and configuration-interaction analyses show that these results are related to the fact that the relative overlap strength between monomeric energy levels is significantly reduced for symmetry-broken orientations of larger nanorods.Article Citation - WoS: 12Citation - Scopus: 12External Complexation of Bodipys by Cb[7] Improves In-Cell Fluorescence Imaging(Royal Soc Chemistry, 2022) Ayhan, Mehmet Menaf; Ozcan, Emrah; Alkan, Fahri; Cetin, Metin; Un, Ilker; Bardelang, David; Cosut, BonyeminOrganic luminescent compounds with high emission properties play a crucial role in fluorescence labelling and optoelectronic devices. In this work, we prepared three water soluble BODIPY derivatives (B-4, B-5, and B-6) which are weakly fluorescent due to non-radiative relaxation pathways (charge transfer: CT or heavy atom effect). However, CB[7] significantly improves BODIPY fluorescence by similar to 10 fold for B-4, and by similar to 3 fold for B-5. The (TD)DFT analyses suggest that for B-4 and B-5, the CT state is blue-shifted as a result of the external binding of CB[7] near the pyridinium groups. This effect favoured a radiative decay through a locally-excited (LE) pi ->pi* transition state of BODIPYs resulting in a CB[7]-induced emission increase in solution (and in the solid state), without compromising singlet-to-triplet intersystem crossing (ISC). The improved emission of the BODIPY center dot CB[7] complexes was used for the fluorescence imaging of U87 cells illustrating the relevance of this approach. These results suggest that BODIPY center dot CB[7] complexes could be used as theragnostic agents by combining fluorescence imaging and treatment by photodynamic therapy.Book Part Advances in the Computation of NMR Parameters for Inorganic Nuclides(Elsevier, 2023) Holmes, Sean T.; Alkan, Fahri; Dybowski, Cecil R.In this article, we discuss practical aspects of the computation of NMR parameters of inorganic nuclides, as well as insights afforded by such calculations into the characterization of molecular-level structure and dynamics and the validation of theoretical models. An emphasis is placed on calculation of the magnetic shielding tensors of solids using cluster-based models that account for intermolecular interactions. In particular, the use of valence modification of terminal atoms using bond valence theory (VMTA/BV), which reduces net charges on clusters through terminal pseudoatoms with nonstandard nuclear charges, is demonstrated to be a robust technique for calculations on nuclei in network solids. Cluster-based calculations, including those that employ the VMTA/BV method, afford a unique opportunity to calculate magnetic shielding tensors for nuclei in solids by using density functional theory approximations beyond the generalized gradient approximation and by incorporating relativistic effects at the spin-orbit level. These developments are spurred by use of the zeroth-order regular approximation (ZORA), which provides a robust method of accounting for relativistic effects (up to the spin-orbit level) experienced by valence electrons. Calculations of NMR parameters are discussed for fluorine, cadmium, tin, tellurium, mercury, lead, and platinum, all of which have seen significant advances in recent years. These examples highlight the importance of such factors as coordination geometry, oxidation state, relativistic effects, and density functional approximations on computed magnetic shielding tensors. © 2023 Elsevier B.V., All rights reserved.Article Citation - WoS: 27Citation - Scopus: 28Revisiting the Role of Charge Transfer in the Emission Properties of Carborane-Fluorophore Systems: A TDDFT Investigation(Amer Chemical Soc, 2022) Tahaoglu, Duygu; Usta, Hakan; Alkan, FahriIn this study, we performed a detailed investigation of the S-1 potential energy surface (PES) of o-carborane-anthracene (o-CB-Ant) with respect to the C-C bond length on o-CB and the dihedral angle between o-CB and Ant moieties. The effects of different substituents (F, Cl, CN, and OH) on carbon- or boron-substituted o-CB, along with a pi-extended acene-based fluorophore, pentacene, on the nature and energetics of S-1 -> S-0 transitions are evaluated. Our results show the presence of a non-emissive S-1 state with an almost pure charge transfer (CT) character for all systems as a result of significant C-C bond elongation (C-C = 2.50-2.56 angstrom) on o-CB. In the case of unsubstituted o-CB-Ant, the adiabatic energy of this CT state corresponds to the global minimum on the S-1 PES, which suggests that the CT state could be involved in emission quenching. Despite large deformations on the o-CB geometry, predicted energy barriers are quite reasonable (0.3-0.4 eV), and the C-C bond elongation can even occur without a noticeable energy penalty for certain conformations. With substitution, it is shown that the dark CT state becomes even more energetically favorable when the substituent shows -M effects (e.g., -CN), whereas substituents showing +M effects (e.g., -OH) can result in an energy increase for the CT state, especially for partially stretched C-C bond lengths. It is also shown that the relative energy of the CT state on the PES depends strongly on the LUMO level of the fluorophore as this state is found to be energetically less favorable compared to other conformations when anthracene is replaced with pi-extended pentacene. To our knowledge, this study shows a unique example of a detailed theoretical analysis on the PES of the S-1 state in o-CB-fluorophore systems with respect to substituents or fluorophore energy levels. Our findings could guide future experimental work in emissive o-CB-fluorophore systems and their sensing/optoelectronic applications.Article Citation - WoS: 68Citation - Scopus: 67An Ultrastable 155-Nuclei Silver Nanocluster Protected by Thiacalix[4]Arene and Cyclohexanethiol for Photothermal Conversion(Wiley-VCH Verlag GmbH, 2022) Wang, Zhi; Alkan, Fahri; Aikens, Christine M.; Kurmoo, Mohamedally; Zhang, Zhen-Yi; Song, Ke-Peng; Sun, DiThiacalix[4]arenes have emerged as a family of macrocyclic ligands to protect metal nanoparticles, but it remains a great challenge to solve the mystery of their structures at the atomic level, especially for those larger than 2 nm. Here, we report the largest known mixed-valence silver nanocluster [Ag-155(CyS)(40)(TC4A)(5)Cl-2] (Ag155) protected by deprotonated cyclohexanethiol (CySH) and macrocyclic ligand p-tert-butylthiacalix[4]arene (H(4)TC4A). Its single-crystal structure consists of a metallic core of four concentric shells, Ag-13@Ag-42@Ag-30@Ag-70, lined with a organic skin of 40CyS(-) and 5TC4A(4-) and 2Cl(-). Ag155 manifests an unusual pseudo-5-fold symmetry dictated by the intrinsic metal atom packing and the regioselective distribution of mixed protective ligands. This work not only reveals a macrocyclic ligand effect on the formation of a large silver nanocluster, but also provides a new structural archetype for comprehensively perceiving their interface and metal kernel structures.Article Citation - WoS: 14Citation - Scopus: 13Understanding Plasmon Coupling in Nanoparticle Dimers Using Molecular Orbitals and Configuration Interaction(Royal Soc Chemistry, 2019) Alkan, Fahri; Aikens, Christine M.We perform a theoretical investigation of the electronic structure and optical properties of atomic nanowire and nanorod dimers using DFT and TDDFT. In both systems at separation distances larger than 0.75 nm, optical spectra show a single feature that resembles the bonding dipole plasmon (BDP) mode. A configuration interaction (CI) analysis shows that the BDP mode arises from constructive coupling of transitions, whereas the destructive coupling does not produce significant oscillator strength for such separation distances. At shorter separation distances, both constructive and destructive coupling produce oscillator strength due to wave-function overlap, which results in multiple features in the calculated spectra. Our analysis shows that a charge-transfer plasmon (CTP) mode arises from destructive coupling of transitions, whereas the BDP results from constructive coupling of the same transitions at shorter separation distances. Furthermore, the coupling elements between these transitions are shown to depend heavily on the amount of exact Hartree-Fock exchange (HFX) in the functional, which affects the splitting of CTP and BDP modes. With 50% HFX or more, the CTP and BDP modes mainly merge into a single feature in the spectra. These findings suggest that the effects of exact exchange must be assessed during the prediction of CTP modes in plasmonic systems.
