WoS İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/394
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Conference Object Citation - WoS: 16Citation - Scopus: 20Machine Learning Analysis of Inflammatory Bowel Disease-Associated Metagenomics Dataset(Institute of Electrical and Electronics Engineers Inc., 2018-09) Hacilar, Hilal; Nalbantoĝlu, Özkan Ufuk; Bakir-Güngör, BurcuThere is an ongoing interplay between humans and our microbial communities. The microorganisms living in our gut produce energy from our food, strengthen our immune system, break down foreign products, and release metabolites and hormones, which are significant for regulating our physiology. The shifts away from this 'healthy' gut microbiome is considered to be associated with many diseases. Inflammatory bowel diseases (IBD) including Crohn's disease and ulcerative colitis, are gut related disorders affecting the intestinal tract. Although some metagenomics studies are conducted on IBD recently, our current understanding of the precise relationships between the human gut microbiome and IBD remains limited. In this regard, the use of state-of-the art machine learning approaches became popular to address a variety of questions like early diagnosis of certain diseases using human microbiota. In this study, we investigate which subset of gut microbiota are mostly associated with IBD and if disease-associated biomarkers can be detected via applying state-of-the art machine learning algorithms and proper feature selection methods. © 2019 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 3Citation - Scopus: 13NSEM: Duygu Analizi için Özgün Yıǧınlanmiş Topluluk Yöntemi(Institute of Electrical and Electronics Engineers Inc., 2018-09) Işik, Yunus Emre; Görmez, Yasin; Kaynar, Oǧuz; Aydin, Zafer; Emre Isik, YunusToday, people often share their ideas, opinions and feelings through forums, social media sites, blogs and similar platforms. For this reason, access to these data has become very easy. Increase in the number of shares makes it possible to analyze and use these data in terms of marketing and politics. However, due to the large number of data, it is impossible that this analysis will be done by humans. Determination of what type of emotion is included automatically is done by sentiment analysis methods. In these methods, the text is defined as a mathematical vector and classified by machine learning methods. Ensemble methods are one of the most important methods used as classifiers in sentiment analysis. In these methods, a classifier error is tried to be solved by another classifier. In sentiment analysis, the feature vector that describes the text is as important as the classifier. Feature vectors obtained using different methods can make mistakes in different places. For this reason, in this study, NSEM is proposed for sentiment analysis, which is a new ensemble method that uses 2 different classifiers and 2 different feature extraction methods. As a result of the analysis, the proposed method is the most successful method with an accuracy rate of 79.1%. © 2019 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 8Citation - Scopus: 9Meme Kanseri Histopatolojik Görüntülerinin Bilgisayar Destekli Sınıflandırılması(Institute of Electrical and Electronics Engineers Inc., 2017-10) Aksebzeci, Bekir Hakan; Kayaaltı, ÖmerNowadays, one of the most common types of cancer is breast cancer. The early and accurate diagnosis of breast cancer has great importance in the treatment of the disease. In the diagnosis of breast cancer, histopathological analysis of cell and tissue specimens taken by biopsy is considered as the gold standard. Histopathological analysis is a tedious process that is highly dependent on the knowledge and experience of the pathologists. In this study; it is aimed to develop a computer-Aided system that can reduce the workload of pathologists and help them in their diagnosis. An image set containing benign and malignant tumor images of breast cancer has been studied. To perform texture analysis on tumor images; first order statistics, Gabor and gray-level co-occurrence matrix (GLCM) feature extraction methods have been applied. Then, various classifiers were applied to the obtained feature matrices and their performances were compared. The highest classification accuracy was achieved 82.06% by Random Forests classifier with feature combination of Gabor and GLCM methods. The results presented here show that computer-Assisted diagnosis of breast cancer is a promising field. © 2018 Elsevier B.V., All rights reserved.Conference Object Citation - WoS: 2Citation - Scopus: 6Makine Öğrenmesi Yöntemleri ile Kredi Kartı Sahteciliğinin Tespiti(Institute of Electrical and Electronics Engineers Inc., 2019-09) Göy, Gökhan; Gezer, Cengiz; Güngör, Vehbi ÇağrıWith the increase in credit card usage of people, the credit card transactions increase dramatically. It is difficult to identify fraudulent transactions among the vast amount of credit card transactions. Although credit card fraud is limited in number of transactions, it causes serious problems in terms of financial losses for individuals and organizations. Even though large number of studies has been conducted to solve this problem, there is no generally accepted solution. In this paper, a publicly available data set is used. The unbalance problem of the data set was solved by using hybrid sampling methods together. On this data set, comparative performance evaluations have been conducted. Different from other studies, the Area Under the Curve (AUC) metric, which expresses the success in such data sets, has also been used in addition to standard performance metrics. Since it is also important to quickly detect credit card fraud transactions; the running time of different methods is also presented as another performance metric. © 2020 Elsevier B.V., All rights reserved.Conference Object Citation - Scopus: 3Protein İkincil Yapı Tahmini Için Makine Öǧrenmesi Yöntemlerinin Karşılaştırılması(Institute of Electrical and Electronics Engineers Inc., 2018-05) Aydin, Zafer; Kaynar, Oǧuz; Görmez, Yasin; Işik, Yunus EmreThree-dimensional structure prediction is one of the important problems in bioinformatics and theoretical chemistry. One of the most important steps in the three-dimensional structure prediction is the estimation of secondary structure. Due to rapidly growing databases and recent feature extraction methods datasets used for predicting secondary structure can potentially contain a large number of samples and dimensions. For this reason, it is important to use algorithms that are fast and accurate. In this study, various classification algorithms have been optimized for the second phase of a two-stage classifier on EVAset benchmark both in the original input space and in the space reduced using the information gain metric. The most accurate classifier is obtained as the support vector machine while the extreme learning machine is significantly faster in model training. © 2018 Elsevier B.V., All rights reserved.Conference Object Citation - Scopus: 1Koroner Arter Hastalığı Tanısı İçin Alan Bilgisi İçeren Topluluk Öznitelik Seçim Yöntemi(Institute of Electrical and Electronics Engineers Inc., 2020-10-05) Kolukisa, Burak; Güngör, Vehbi Çağrı; Bakir-Güngör, Burcu; Gungor, Burcu BakirCoronary Artery Disease (CAD) is the condition where, the heart is not fed enough as a result of the accumulation of fatty matter called atheroma in the walls of the arteries. In 2016, CAD accounts for 31% (17.9 million) of the world's total deaths and its diagnosis is difficult. It is estimated that approximately 23.6 million people will die from this disease in 2030. With the development of machine learning and data mining techniques, it might be possible to diagnose CAD inexpensively and easily via examining some physical and biochemical values. In this study, for the CAD classification problem, a novel ensemble feature selection methodology that incorporates domain knowledge is proposed. Via applying the proposed methodology on the UCI Cleveland CAD dataset and using different classification algorithms, performance metrics are compared. It is shown that in our experiments, when Multilayer Perceptron classifier is used with 9 selected features, our proposed solution reached 85.47% accuracy, 82.96% accuracy and 0.839 F-Measure. As a future work, we aim to generate a machine learning model that can quickly diagnose CAD on real-time data in hospitals. © 2021 Elsevier B.V., All rights reserved.