WoS İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/394
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Article An Elementary Proof of Lucas's Theorem(Ramanujan Mathematical Society, 2025) Cinkir, ZubeyirLucas's Theorem is about finding the result of a binomial coefficient modulo a prime p efficiently. The result is expressed as a product of binomial coefficients involving the base p expansions of the parameters of the original binomial coefficient. We give an elementary proof of Lucas's Theorem by deriving an analogous Vander-monde identity modulo a prime number.Conference Object A Novel Signaling Pathway That Governs Tumor Metastasis: Ceramide Regulates Direct Crosstalk Between TGF-Β and Sonic Hedgehog Signaling(Federation of American Society for Experimental Biology, 2016) Gencer, Salih; Ogretmen, BesimArticle Deep-Learning Detection of Open-Apex Teeth on Panoramic Radiographs Using YOLO Models(Springer, 2025-12-23) Edik, Merve; Celebi, Fatma; Cukurluoglu, AykaganObjectivesThe use of deep learning in detecting teeth with open apices can prevent the need for additional radiographs for patients. The presented study aims to detect open-apex teeth using You Only Look Once (YOLO)-based deep learning models and compare these models.MethodsA total of 966 panoramic radiographs were included in the study. Open-apex teeth in panoramic radiographs were labeled. During the labeling process, they were divided into 6 classes in the maxilla and mandible, namely incisors, premolars, and molars. AI models YOLOv3, YOLOv4, and YOLOv5 were used. To evaluate the performance of the three detection models, both overall and separately for each class in the test dataset, precision, recall, average precision (mAP), and F1 score were calculated.ResultsYOLOv4 achieved the highest overall performance with a mean average precision (mAP) of 87.84% at IoU (Intersection over Union) 0.5 (mAP@0.5), followed by YOLOv5 with 85.6%, and YOLOv3 with 84.46%. Regarding recall, YOLOv4 also led with 90%, while both YOLOv3 and YOLOv5 reached 89%. Moreover, the F1 score was the highest for YOLOv4 (0.87), followed by YOLOv3 (0.86) and YOLOv5 (0.85).ConclusionsIn this study, YOLOv3, YOLOv4, and YOLOv5 were evaluated for the detection of open-apex teeth, and their mAP, recall, and F1 scores exceeded 84%. Deep learning-based systems can provide faster and more accurate results in the detection of open-apex teeth. This may help reduce the need for additional radiographs from patients and aid dentists by saving time.Article G-C3N4@Fe3O4 Nanomaterial Synthesis for Magnetic Solid-Phase Extraction and Photocatalytic Removal of Basic Blue 3(Springer Heidelberg, 2025-12-16) Kizil, Nebiye; Kayaci, Nilgun; Erbilgin, Duygu Erkmen; Yola, Mehmet Lutfi; Yilmaz, Erkan; Soylak, MustafaThe present research synthesized a g-C3N4@Fe3O4 hybrid material for efficient magnetic solid-phase extraction (MSPE) and photocatalytic degradation of Basic Blue 3 (BB3) dye from wastewater. Characterization of the synthesized g-C3N4@Fe3O4 was conducted through Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), scanning electron microscopy (SEM), and energy-dispersive X-ray spectroscopy (EDX). The optimization of the method was carried out by examining parameters such as pH, g-C3N4@Fe3O4 amount, sample volume, and adsorption/desorption duration. In addition, analytical performance criteria such as limit of detection (LOD), limit of quantification (LOQ), and relative standard deviation (RSD) of the MSPE method were calculated as 1.29 mu g L-1, 4.28 mu g L-1, and 1.9%, respectively. The method was applied to real samples, including wastewater and textiles, and validated through addition/recovery studies for the magnetic solid-phase extraction procedure. The recoveries were gained between 91 and 100%. The reusability synthesized g-C3N4@Fe3O4 was also evaluated. The recoveries for Basic Blue 3 dye decreased to 81% after the fourth experiment. Furthermore, the photocatalytic performance of the g-C3N4@Fe3O4 hybrid material was evaluated due to its good surface area and strong interaction with Basic Blue 3 dye. The photocatalytic activity of g-C3N4@Fe3O4 hybrid material was calculated as 96.8% for 100 mg in 300 min.Conference Object Shooting a Water Slug Into an Air Column with and without Vent(Amer Soc Mechanical Engineers, 2025-07-20) Bozkus, Zafer; Dincer, Ali Ersin; Tijsseling, Arris S.; van de Ven, FonsCompressed air is used to shoot a single water slug into an upward sloping pipe with elbow and orifice at its upper end. The experiment concerns a 12 m long pipe of 0.1 m diameter connected to a 0.5 m3 air vessel. The 10 to 50 kg heavy slugs are initially at rest in the lower part of the system. Because the upper end is closed by a flange with orifice, the water slug is expected not to hit the upstream elbow. It causes - like a piston - a fast compression of the air column ahead of it. Sometimes the slug bounces back and forth, which results in a pressure oscillation of serious amplitude. Numerical simulations based on an elementary mathematical model are normally used to interpret the pressure measurements, not all of which are fully understood. Lessons learned are summarised, and suggestions for improved experiments and enhanced simulations are given. The research is of importance, for example, for steam lines where liquid condensates may collect in lower parts after power failure. Start-up of the system will then lead to rapid slug acceleration and potentially damaging impact on elbows, orifices, and machinery.Article Does Your Love Lift Me Higher? A Direct Replication of the Energising Role of Secure Relationships(John Wiley & Sons Ltd, 2025-12-07) Lagap, Adar Cem; Harma, MehmetPrevious work has revealed that priming people with significant others increases feelings of security and energy, and in turn, boosts exploration motivations. In this preregistered study, we directly replicated Luke et al.'s (2012) Study 2 (N = 281). We found similar results as the replicated study regarding increased security feelings and exploration motivations on the self-report measures after the priming. However, we did not find any support for the increased energy feelings after the attachment security priming. In addition, contrary to Luke et al.'s (2012) results, energy feelings did not mediate the relationship between security priming and exploration motivations. A discussion of null findings, along with the limitations of self-reports and potential misinterpretation of the mediational analyses, follows. We also discuss possible future implications of the current findings.Article Citation - WoS: 2Citation - Scopus: 2Neuroinflammatory Human Brain Organoids Enable Comprehensive Drug Screening Studies: Fingolimod and Its Analogues in Focus(Bentham Science Publishing Ltd, 2025-10-08) Acar, Busra; Pepe, Nihan Aktas; Zivkovic, Aleksandra; Stark, Holger; Sen, AlaattinIntroduction The absence of physiologically relevant models for neuroinflammatory brain disorders, such as multiple sclerosis (MS), highlights the need for improved drug screening platforms. To bridge this gap, this study aimed to develop a human brain organoid (hBO) model incorporating essential neural cell types, including astrocytes, microglia, and oligodendrocytes.Methods hBOs were generated from H9 stem cells, and neuroinflammatory characteristics were elicited by lipopolysaccharide (LPS). The expression of specific neuronal and inflammatory markers was assessed through qRT-PCR, immunofluorescence staining (IFS), and ELISA.Results IFS of mature hBOs with anti-SOX2, anti-SATB2, anti-MAPT, anti-GFAP, anti-MBP, and anti-IBA1 antibodies and images collected with the confocal microscope confirmed the differentiation of H9 cells into cortical neurons, astrocytes, microglia, and oligodendrocyte cell types. Elevated GFAP, IBA1, NF-kappa B, and IL-6 levels, along with reduced CNPase expression with LPS treatment, were considered reflective of MS-like pathology and were used to test fingolimod and its derivatives. Fingolimod and all its derivatives, specifically ST-1505, decreased MAPT (2.1-fold in ELISA, 1.7-fold in IFS), GFAP (1.8-fold in IFS), TNF alpha (5.4-fold in qRT-PCR), and FABP (1.5-fold in ELISA) levels, and increased IL-10 (11-fold in qRT-PCR) and MBP (2.9-fold in IFS) levels.Discussion The present data collectively showed LPS to evoke neuroinflammation in the hBO model, while fingolimod and its derivatives, particularly ST-1505, exhibited significant anti-inflammatory and neuroprotective properties by counteracting these evoked changes in the hBO model.Conclusion The findings supported the applicability of brain organoids as a model system for drug screening studies for neuroinflammatory brain diseases.Article Toward the Design of New Α-Carboline Derivatives Against Anaplastic Lymphoma Kinase (Alk): A Comprehensive in Silico Approach(Wiley-VCH Verlag GmbH, 2025-11) Sari, Ceyhun; Akcok, IsmailAfter the first description of anaplastic lymphoma kinase (ALK) in an anaplastic large cell lymphoma cell line as a nucleophosmin (NPM) fusion partner, ALK and its various fusion partners have been implicated in numerous cancers such as non-small cell lung cancer (NSCLC), anaplastic large cell lymphoma (ALCL), neuroblastoma, and rhabdomyosarcoma. In the last decade, several compounds targeting ALK have been developed and approved by the Food and Drug Administration (FDA). Despite the advances of generations of ALK inhibitors, a recent study highlighted that around half of the ALK-positive NSCLC patients will go through disease progression in response to first-line alectinib, which is a second-generation ALK inhibitor. In this study, we aimed to propose a novel alpha-carboline compound targeting the ALK tyrosine kinase domain to be used against various types of cancer in which ALK fusion proteins may be involved. In this regard, we designed more than 200 alpha-carboline derivatives and investigated their binding properties against ALK tyrosine kinase by using in silico protocols consisting of molecular docking studies, molecular dynamics simulations, MM/PBSA binding free energy calculation, and essential dynamics analysis. Considering the obtained results, we developed two promising candidates, compounds 208 & 209 with -9.05 and -9.80 binding energies, respectively, which demonstrated improved binding profiles over the course of a 300 ns simulation.Article Crashworthiness Evaluation of 3D-Printed Hybrid-Design Multi-Cell Energy Absorbers Under Lateral Compression for Unmanned Aerial Vehicles(Springer Heidelberg, 2025-11-25) Atahan, M. Gokhan; Zeybek, Halil; Ozturk, SezginEnergy absorbers can be strategically integrated into critical areas of unmanned aerial vehicles to protect their structural integrity and electronic components in the event of an accident. In this study, hybrid-design multi-cell energy absorber configurations were proposed, and their crashworthiness performance and collapse mechanisms were comparatively analyzed. Hybrid energy absorbers were designed considering circular, square, hexagonal, and re-entrant unit cell geometries. The energy absorber configurations were produced via additive manufacturing. Compared to the single-cell circular energy absorber, the hybrid-design multi-cell approach resulted in a higher peak crushing force value, while offering considerable enhancements in other crashworthiness parameters. Configuration 3 is recommended for use in energy absorber applications in unmanned aerial vehicles due to its superior crashworthiness performance. Moreover, in hybrid-design multi-cell energy absorbers, the selection of layer geometries significantly influences deformation capability. Compared to the single-cell circular configuration (Configuration 1), Configuration 3 demonstrated superior crashworthiness performance by increasing the MCF, EA, and SEA values by 7.47, 4.47, and 1.41 times, respectively.Article Tuning Properties of Amorphous Boron Via Hydrogenation: An Ab Initio Study(Elsevier, 2026-01) Durandurdu, MuratAb initio simulations are employed to investigate the structural, mechanical, and electronic properties of hydrogenated amorphous boron (a-B:H) across a range of hydrogen concentrations (approximate to 6-21 at.%). The results indicate that pentagonal-like boron clusters constitute the primary structural motifs. The bonding environment consists of both B-H terminal bonds and B-H-B bridging bonds, with the fraction of bridging bonds ranging from 10 % to 16 %. Increasing the hydrogen content leads to a reduction in density and bulk modulus, accompanied by a systematic widening of the electronic band gap. These results demonstrate that hydrogen incorporation profoundly modifies the atomic structure, softens the network, and enhances the semiconducting character of a-B:H, highlighting the tunability of properties in boron-based amorphous materials.