PubMed İndeksli Yayınlar Koleksiyonu
Permanent URI for this collectionhttps://hdl.handle.net/20.500.12573/397
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Article Citation - WoS: 4Citation - Scopus: 7Network Anomaly Detection Using Deep Autoencoder and Parallel Artificial Bee Colony Algorithm-Trained Neural Network(PeerJ Inc, 2024-10-08) Hacilar, Hilal; Dedeturk, Bilge Kagan; Bakir-Gungor, Burcu; Gungor, Vehbi CagriCyberattacks are increasingly becoming more complex, which makes intrusion detection extremely difficult. Several intrusion detection approaches have been developed in the literature and utilized to tackle computer security intrusions. Implementing machine learning and deep learning models for network intrusion detection has been a topic of active research in cybersecurity. In this study, artificial neural networks (ANNs), a type of machine learning algorithm, are employed to determine optimal network weight sets during the training phase. Conventional training algorithms, such as back- propagation, may encounter challenges in optimization due to being entrapped within local minima during the iterative optimization process; global search strategies can be slow at locating global minima, and they may suffer from a low detection rate. In the ANN training, the Artificial Bee Colony (ABC) algorithm enables the avoidance of local minimum solutions by conducting a high-performance search in the solution space but it needs some modifications. To address these challenges, this work suggests a Deep Autoencoder (DAE)-based, vectorized, and parallelized ABC algorithm for training feed-forward artificial neural networks, which is tested on the UNSW-NB15 and NF-UNSW-NB15-v2 datasets. Our experimental results demonstrate that the proposed DAE-based parallel ABC-ANN outperforms existing metaheuristics, showing notable improvements in network intrusion detection. The experimental results reveal a notable improvement in network intrusion detection through this proposed approach, exhibiting an increase in detection rate (DR) by 0.76 to 0.81 and a reduction in false alarm rate (FAR) by 0.016 to 0.005 compared to the ANN-BP algorithm on the UNSWNB15 dataset. Furthermore, there is a reduction in FAR by 0.006 to 0.0003 compared to the ANN-BP algorithm on the NF-UNSW-NB15-v2 dataset. These findings underscore the effectiveness of our proposed approach in enhancing network security against network intrusions.Article Citation - WoS: 35Citation - Scopus: 42Inflammatory Bowel Disease Biomarkers of Human Gut Microbiota Selected via Different Feature Selection Methods(PeerJ Inc, 2022-04-25) Bakir-Gungor, Burcu; Lar, Hilal Hac; Jabeer, Amhar; Nalbantoglu, Ozkan Ufuk; Aran, Oya; Yousef, Malik; Hacilar, HilalThe tremendous boost in next generation sequencing and in the "omics" technologies makes it possible to characterize the human gut microbiome-the collective genomes of the microbial community that reside in our gastrointestinal tract. Although some of these microorganisms are considered to be essential regulators of our immune system, the alteration of the complexity and eubiotic state of microbiota might promote autoimmune and inflammatory disorders such as diabetes, rheumatoid arthritis, Inflammatory bowel diseases (IBD), obesity, and carcinogenesis. IBD, comprising Crohn's disease and ulcerative colitis, is a gut-related, multifactorial disease with an unknown etiology. IBD presents defects in the detection and control of the gut microbiota, associated with unbalanced immune reactions, genetic mutations that confer susceptibility to the disease, and complex environmental conditions such as westernized lifestyle. Although some existing studies attempt to unveil the composition and functional capacity of the gut microbiome in relation to IBD diseases, a comprehensive picture of the gut microbiome in IBD patients is far from being complete. Due to the complexity of metagenomic studies, the applications of the state-of-the-art machine learning techniques became popular to address a wide range of questions in the field of metagenomic data analysis. In this regard, using IBD associated metagenomics dataset, this study utilizes both supervised and unsupervised machine learning algorithms, (i) to generate a classification model that aids IBD diagnosis, (ii) to discover IBD-associated biomarkers, (iii) to discover subgroups of IBD patients using k-means and hierarchical clustering approaches. To deal with the high dimensionality of features, we applied robust feature selection algorithms such as Conditional Mutual Information Maximization (CMIM), Fast Correlation Based Filter (FCBF), min redundancy max relevance (mRMR), Select K Best (SKB), Information Gain (IG) and Extreme Gradient Boosting (XGBoost). In our experiments with 100-fold Monte Carlo cross-validation (MCCV), XGBoost, IG, and SKB methods showed a considerable effect in terms of minimizing the microbiota used for the diagnosis of IBD and thus reducing the cost and time. We observed that compared to Decision Tree, Support Vector Machine, Logitboost, Adaboost, and stacking ensemble classifiers, our Random Forest classifier resulted in better performance measures for the classification of IBD. Our findings revealed potential microbiome-mediated mechanisms of IBD and these findings might be useful for the development of microbiome-based diagnostics.